RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where bioproject = "PRJNA631796" and tax_phylum = "Kitrinoviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 16 ✖

tax_kingdom 1

bioproject 1

  • PRJNA631796 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1152003 1152003 PRJNA631796_P_NODE_13581_length_195_cov_2.432836_g13303_i0 PRJNA631796 13581 195 2.432836 4.7440302 Potexvirus 12176 Viruses Viruses 350 5.34e-92   NTclustered gi|1805119874|gb|MN038406.1| 112229 g13303 i0 98.974 58.9384615384615 195 2 100 0 1 195 795 989 Pepino mosaic virus strain MZ3, complete genome blastn 11493 350 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
3154260 3154260 PRJNA631796_P_NODE_2003_length_504_cov_1.029345_g1728_i0 PRJNA631796 2003 504 1.029345 5.1878988 Potexvirus pepini 3433856 Viruses Viruses 893 0   NTclustered gi|336288971|gb|HQ663890.1| 112229 g1728 i0 98.611 58.2757936507937 504 7 100 0 1 504 1221 1724 Pepino mosaic virus isolate SAR09, complete genome blastn 29371 893 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
5707029 5707029 PRJNA631796_P_NODE_7305_length_252_cov_1.586387_g7027_i0 PRJNA631796 7305 252 1.586387 3.99769524 Potexvirus pepini 3433856 Viruses Viruses 466 6.89e-127   NTclustered gi|1421680462|gb|MH550196.1| 112229 g7027 i0 100 100 252 0 100 0 1 252 660 911 Pepino mosaic virus isolate AG17-9b TGBp1, TGBp2, TGBp3, and CP genes, complete cds blastn 25200 466 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
8804973 8804973 PRJNA631796_P_NODE_3887_length_353_cov_4.787671_g3609_i0 PRJNA631796 3887 353 4.787671 16.90047863 Potexvirus 12176 Viruses Viruses 625 1.5699999999999996e-174   NTclustered gi|1830461458|gb|MT018448.1| 112229 g3609 i0 98.584 61.9830028328612 353 5 100 0 1 353 3879 3527 Pepino mosaic virus isolate Mo, complete genome blastn 21880 625 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
11355431 11355431 PRJNA631796_P_NODE_3509_length_373_cov_4.009615_g3232_i0 PRJNA631796 3509 373 4.009615 14.95586395 Potexvirus 12176 Viruses Viruses 678 0   NTclustered gi|217031250|gb|FJ457097.1| 112229 g3232 i0 99.464 59.8900804289544 373 2 100 0 1 373 1991 1619 Pepino mosaic virus isolate PCH 06/104 replicase, triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein genes, complete cds blastn 22339 678 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
14632319 14632319 PRJNA631796_P_NODE_1432_length_601_cov_3.583333_g1168_i0 PRJNA631796 1432 601 3.583333 21.53583133 Potexvirus pepini 3433856 Viruses Viruses 1088 0   NTclustered gi|217031250|gb|FJ457097.1| 112229 g1168 i0 99.334 70.1131447587354 601 4 100 0 1 601 3137 2537 Pepino mosaic virus isolate PCH 06/104 replicase, triple gene block protein 1 (TGBp1), triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), and coat protein genes, complete cds blastn 42138 1088 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
16454791 16454791 PRJNA631796_P_NODE_5553_length_292_cov_3.783550_g5275_i0 PRJNA631796 5553 292 3.78355 11.047966 Potexvirus 12176 Viruses Viruses 529 1.0299999999999996e-145   NTclustered gi|2523281636|gb|OR082776.1| 112229 g5275 i0 99.315 60.8527397260274 292 2 100 0 1 292 3261 3552 Pepino mosaic virus isolate DSMZ PV-0999, complete genome blastn 17769 529 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
17729880 17729880 PRJNA631796_P_NODE_13734_length_192_cov_4.030534_g13456_i0 PRJNA631796 13734 192 4.030534 7.73862528 Potexvirus 12176 Viruses Viruses 355 1.13e-93   NTclustered gi|1839429935|gb|MK860472.1| 112229 g13456 i0 100 100 192 0 100 0 1 192 564 373 Pepino mosaic virus isolate MU14_11.15a_Ra TGB1 protein, TGB2 protein, TGB3 protein, and CP protein genes, complete cds blastn 19200 355 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
17729896 17729896 PRJNA631796_P_NODE_3214_length_390_cov_3.963526_g2937_i0 PRJNA631796 3214 390 3.963526 15.4577514 Potexvirus 12176 Viruses Viruses 710 0   NTclustered gi|2546780442|gb|OR138034.1| 112229 g2937 i0 99.487 99.6076923076923 390 2 100 0 1 390 58 447 Pepino mosaic virus isolate MXM18 RNA-dependent RNA polymerase gene, partial cds blastn 38847 710 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
18455506 18455506 PRJNA631796_P_NODE_9775_length_220_cov_1.572327_g9497_i0 PRJNA631796 9775 220 1.572327 3.4591194 Bromovirus BMV 3427622 Viruses Viruses 363 7.92e-96   NTclustered gi|2239525971|gb|MW568013.1| 12302 g9497 i0 96.364 34.3590909090909 220 8 100 0 1 220 667 448 Brome mosaic virus isolate BMV-PK RdRp polymerase gene, complete cds blastn 7559 363 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
19729967 19729967 PRJNA631796_P_NODE_11396_length_207_cov_5.410959_g11118_i0 PRJNA631796 11396 207 5.410959 11.20068513 Potexvirus pepini 3433856 Viruses Viruses 383 5.65e-102   NTclustered gi|2575892324|gb|OR233202.1| 112229 g11118 i0 100 62.9710144927536 207 0 100 0 1 207 1238 1032 Pepino mosaic virus isolate DSMZ PV-0716, complete genome blastn 13035 383 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
19730005 19730005 PRJNA631796_P_NODE_3196_length_391_cov_3.603030_g2919_i0 PRJNA631796 3196 391 3.60303 14.0878473 Potexvirus pepini 3433856 Viruses Viruses 723 0   NTclustered gi|429474434|gb|JX866667.1| 112229 g2919 i0 100 97.0204603580563 391 0 100 0 1 391 408 18 Pepino mosaic virus isolate VFTX12-19, complete genome blastn 37935 723 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
19730021 19730021 PRJNA631796_P_NODE_6476_length_269_cov_3.278846_g6198_i0 PRJNA631796 6476 269 3.278846 8.82009574 Potexvirus pepini 3433856 Viruses Viruses 492 1.23e-134   NTclustered gi|1805119886|gb|MN038408.1| 112229 g6198 i0 99.628 93.8289962825279 269 1 100 0 1 269 801 533 Pepino mosaic virus strain AG2, complete genome blastn 25240 492 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
22280510 22280510 PRJNA631796_P_NODE_9758_length_220_cov_1.855346_g9480_i0 PRJNA631796 9758 220 1.855346 4.0817612 Potexvirus pepini 3433856 Viruses Viruses 407 3.61e-109   NTclustered gi|1421680462|gb|MH550196.1| 112229 g9480 i0 100 100 220 0 100 0 1 220 1094 875 Pepino mosaic virus isolate AG17-9b TGBp1, TGBp2, TGBp3, and CP genes, complete cds blastn 22000 407 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
22829477 22829477 PRJNA631796_P_NODE_6718_length_263_cov_2.866337_g6440_i0 PRJNA631796 6718 263 2.866337 7.53846631 Potexvirus 12176 Viruses Viruses 475 1.2e-129   NTclustered gi|148283741|gb|EF408821.3| 112229 g6440 i0 99.24 97.8098859315589 263 2 100 0 1 263 4144 3882 Pepino mosaic virus isolate PepMV-PK, complete genome blastn 25724 475 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
26922745 26922745 PRJNA631796_P_NODE_12922_length_202_cov_0.907801_g12644_i0 PRJNA631796 12922 202 0.907801 1.83375802 Grapevine-associated tombus-like virus 3 2814343 Viruses Viruses 67 2.17e-11   NR QXN75444.1 2814343 g12644 i0 61.4 0.653465346534653 44 17 65.3 0 66 197 2 45 QXN75444.1 MAG: RNA-dependent RNA polymerase, partial [Grapevine-associated tombus-like virus 3] diamond 132 67 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae   Grapevine-associated tombus-like virus 3

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;