RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA631796" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA631796 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7529933 7529933 PRJNA631796_S_NODE_132706_length_198_cov_3.306569_g132539_i0 PRJNA631796 132706 198 3.306569 6.54700662 Fimbriimonas 1005038 Bacteria Bacteria 281 2.01e-71   NTclustered gi|663071213|gb|CP007139.1| 661478 g132539 i0 92.424 115.106060606061 198 13 99 2 2 198 29495 29691 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 22791 281 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
9531915 9531915 PRJNA631796_P_NODE_5608_length_291_cov_1.747826_g5330_i0 PRJNA631796 5608 291 1.747826 5.08617366 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 178 4.26e-40   NTclustered gi|2874253689|emb|OY969415.1| 157466 g5330 i0 81.333 47.6666666666667 225 36 76 6 43 264 3914811 3915032 MAG: uncultured Armatimonadetes bacterium isolate MFD00905.bin.2.19 genome assembly, chromosome: 1 blastn 13871 178 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
12631149 12631149 PRJNA631796_S_NODE_27250_length_255_cov_1.319588_g27083_i0 PRJNA631796 27250 255 1.319588 3.3649494 Fimbriimonas 1005038 Bacteria Bacteria 372 1.57e-98   NTclustered gi|663071213|gb|CP007139.1| 661478 g27083 i0 93.281 441.043137254902 253 15 99 2 1 253 28266 28516 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 112466 372 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
16454810 16454810 PRJNA631796_P_NODE_8573_length_233_cov_1.325581_g8295_i0 PRJNA631796 8573 233 1.325581 3.08860373 Armatimonadota 67819 Bacteria Bacteria 313 8.66e-81   NTclustered gi|1996217993|dbj|AP021858.1| 2608984 g8295 i0 91.026 178.648068669528 234 17 99 4 2 233 36375 36144 Candidatus Nitrosymbiomonas proteolyticus DNA, complete genome blastn 41625 313 1 Bacteria   Bacillati Armatimonadota       Candidatus Nitrosymbiomonas Candidatus Nitrosymbiomonas proteolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;