RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA631796", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA631796 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7529875 7529875 PRJNA631796_P_NODE_11566_length_207_cov_0.876712_g11288_i0 PRJNA631796 11566 207 0.876712 1.81479384 Treponema 157 Bacteria Bacteria 377 2.63e-100   NTclustered gi|373133914|gb|JQ295794.1| 158 g11288 i0 99.517 110 207 1 100 0 1 207 96 302 Treponema denticola canine oral taxon 197 clone 1Y059 16S ribosomal RNA gene, partial sequence blastn 22770 377 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
15180438 15180438 PRJNA631796_P_NODE_9852_length_219_cov_2.202532_g9574_i0 PRJNA631796 9852 219 2.202532 4.82354508 Treponema 157 Bacteria Bacteria 405 1.29e-108   NTclustered gi|1996291085|gb|CP027017.1| 58231 g9574 i0 100 196.972602739726 219 0 100 0 1 219 1014809 1014591 Treponema medium strain T19 chromosome, complete genome blastn 43137 405 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema medium
19003489 19003489 PRJNA631796_P_NODE_8475_length_234_cov_1.560694_g8197_i0 PRJNA631796 8475 234 1.560694 3.65202396 Treponema 157 Bacteria Bacteria 407 3.88e-109   NTclustered gi|2034589463|gb|CP050497.1| 69710 g8197 i0 98.276 179.918803418803 232 4 99 0 3 234 214898 214667 Treponema vincentii strain OMZ 806 chromosome, complete genome blastn 42101 407 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
24103889 24103889 PRJNA631796_P_NODE_10739_length_211_cov_1.160000_g10461_i0 PRJNA631796 10739 211 1.16 2.4476 Treponema 157 Bacteria Bacteria 390 3.459999999999999e-104   NTclustered gi|3132616|gb|AF061352.1|AF061352 76138 g10461 i0 100 103.037914691943 211 0 100 0 1 211 211 1 Treponema sp. I:8:3146 16S ribosomal RNA gene, partial sequence blastn 21741 390 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. I:8:3146

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;