RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA631796" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA631796 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6981884 6981884 PRJNA631796_P_NODE_8966_length_228_cov_8.161677_g8688_i0 PRJNA631796 8966 228 8.161677 18.60862356 Nannochloris normandinae 926285 Plants Plants 411 2.909999999999999e-110   NTclustered gi|922575245|gb|JQ921007.1| 926285 g8688 i0 99.123 108.535087719298 228 2 100 0 1 228 374 147 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 24746 411 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
13357545 13357545 PRJNA631796_P_NODE_10991_length_209_cov_1.101351_g10713_i0 PRJNA631796 10991 209 1.101351 2.30182359 Diplosphaera sundellii 3135960 Plants Plants 303 4.58e-78   NTclustered gi|2878821371|gb|PQ563290.1| 3135960 g10713 i0 97.727 3.97129186602871 176 4 84 0 1 176 8291 8116 Diplosphaera sundellii mitochondrion, complete genome blastn 830 303 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sundellii
13357563 13357563 PRJNA631796_P_NODE_13631_length_194_cov_3.413534_g13353_i0 PRJNA631796 13631 194 3.413534 6.62225596 Nannochloris normandinae 926285 Plants Plants 351 1.47e-92   NTclustered gi|922575245|gb|JQ921007.1| 926285 g13353 i0 99.482 103.798969072165 193 1 99 0 2 194 806 614 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 20137 351 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
21005754 21005754 PRJNA631796_P_NODE_10757_length_210_cov_6.966443_g10479_i0 PRJNA631796 10757 210 6.966443 14.6295303 Prasiolopsis sp. SAG 84.81 3239232 Plants Plants 305 1.28e-78   NTclustered gi|698347906|gb|KM462862.1| 1562155 g10479 i0 92.857 121.666666666667 210 15 100 0 1 210 1890 1681 Prasiolopsis sp. SAG 84.81 chloroplast, complete genome blastn 25550 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Prasiolopsis Prasiolopsis sp. SAG 84.81
22280435 22280435 PRJNA631796_P_NODE_10258_length_215_cov_2.454545_g9980_i0 PRJNA631796 10258 215 2.454545 5.27727175 Asterochloris sp. CNOR1 3094912 Plants Plants 100 6.67e-17   NTclustered gi|2686835492|emb|OZ017765.1| 3094912 g9980 i0 89.286 0.390697674418605 84 3 36 1 138 215 3525 3608 Asterochloris sp. CNOR1 genome assembly, organelle: plastid:chloroplast blastn 84 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Asterochloris Asterochloris sp. CNOR1
27820147 27820147 PRJNA631796_P_NODE_12084_length_205_cov_0.888889_g11806_i0 PRJNA631796 12084 205 0.888889 1.82222245 Eukaryota 2759 Plants Plants 102 5.6899999999999995e-25   NR XP_001701780.2 3055 g11806 i0 70.6 5.97073170731707 68 20 99.5 0 204 1 165 232 XP_001701780.2 ribosomal protein L15 [Chlamydomonas reinhardtii] diamond 1224 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;