RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA631796", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA631796 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8256542 8256542 PRJNA631796_P_NODE_12967_length_202_cov_0.893617_g12689_i0 PRJNA631796 12967 202 0.893617 1.80510634 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 261 2.68e-65   NTclustered gi|2874253978|emb|OY970303.1| 412054 g12689 i0 90.099 331.306930693069 202 19 100 1 1 202 8175923 8176123 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 66924 261 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9531962 9531962 PRJNA631796_S_NODE_2488_length_402_cov_1.838710_g2321_i0 PRJNA631796 2488 402 1.83871 7.3916142 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 473 6.939999999999999e-129   NTclustered gi|2874253978|emb|OY970303.1| 412054 g2321 i0 88.06 64.81592039801 402 44 100 4 1 402 1903824 1903427 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 26056 473 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18455440 18455440 PRJNA631796_P_NODE_12795_length_202_cov_1.418440_g12517_i0 PRJNA631796 12795 202 1.41844 2.8652488 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 252 1.62e-62   NTclustered gi|2874253978|emb|OY970303.1| 412054 g12517 i0 89.268 282.034653465347 205 16 100 6 1 202 1904528 1904729 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 56971 252 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
22829428 22829428 PRJNA631796_P_NODE_10518_length_213_cov_1.684211_g10240_i0 PRJNA631796 10518 213 1.684211 3.58736943 Gemmatimonas 173479 Bacteria Bacteria 388 1.26e-103   NTclustered gi|470475286|ref|NR_076270.1| 173480 g10240 i0 99.531 141.953051643192 213 1 100 0 1 213 1309 1097 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 30236 388 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;