RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA631796", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA631796 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1152061 1152061 PRJNA631796_S_NODE_133181_length_195_cov_7.686567_g133014_i0 PRJNA631796 133181 195 7.686567 14.98880565 Vermamoeba 1260114 Tubulinea other_Eukaryota 350 5.34e-92   NTclustered gi|300078496|gb|GU001158.1| 5778 g133014 i0 98.974 39.774358974359 195 2 100 0 1 195 2702 2896 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7756 350 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10807545 10807545 PRJNA631796_P_NODE_10429_length_214_cov_1.516340_g10151_i0 PRJNA631796 10429 214 1.51634 3.2449676 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 385 1.64e-102   NTclustered gi|909719645|gb|KT185625.1| 5778 g10151 i0 99.065 2 214 2 100 0 1 214 6306 6093 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 428 385 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12631147 12631147 PRJNA631796_S_NODE_16870_length_273_cov_6.268868_g16703_i0 PRJNA631796 16870 273 6.268868 17.11400964 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 483 7.5e-132   NTclustered gi|300078496|gb|GU001158.1| 5778 g16703 i0 98.535 37.6153846153846 273 4 100 0 1 273 949 1221 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10269 483 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21005860 21005860 PRJNA631796_S_NODE_31817_length_249_cov_4.031915_g31650_i0 PRJNA631796 31817 249 4.031915 10.03946835 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 455 1.47e-123   NTclustered gi|909719645|gb|KT185625.1| 5778 g31650 i0 99.598 3.06024096385542 249 1 100 0 1 249 6069 6317 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 762 455 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;