RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA631119" and tax_phylum = "Olpidiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA631119 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10807507 10807507 PRJNA631119_P_NODE_5029_length_504_cov_2.832947_g4911_i0 PRJNA631119 5029 504 2.832947 14.27805288 Olpidium brassicae 70189 Fungi Fungi 721 0   NTclustered gi|358030887|dbj|AB609177.1| 70189 g4911 i0 92.46 93.5238095238095 504 38 100 0 1 504 1673 1170 Olpidium brassicae EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19784, clone: 2 blastn 47136 721 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
12082590 12082590 PRJNA631119_P_NODE_12490_length_352_cov_2.043011_g12372_i0 PRJNA631119 12490 352 2.043011 7.19139872 Eukaryota 2759 Fungi Fungi 202 2.62e-59   NR BAL15353.1 70189 g12372 i0 81.2 5.98295454545455 117 22 99.7 0 351 1 377 493 BAL15353.1 translation elongation factor 2, partial [Olpidium brassicae] diamond 2106 202 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
18455201 18455201 PRJNA631119_P_NODE_11595_length_362_cov_1.598616_g11477_i0 PRJNA631119 11595 362 1.598616 5.78698992 Olpidium brassicae 70189 Fungi Fungi 486 7.939999999999999e-133   NTclustered gi|358030887|dbj|AB609177.1| 70189 g11477 i0 90.884 38.0138121546961 362 33 100 0 1 362 681 320 Olpidium brassicae EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19784, clone: 2 blastn 13761 486 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
30460472 30460472 PRJNA631119_P_NODE_6133_length_465_cov_1.364796_g6015_i0 PRJNA631119 6133 465 1.364796 6.3463014 Olpidium bornovanus 278681 Fungi Fungi 207 1.41e-60   NR BAL15351.1 278681 g6015 i0 63.5 1.0258064516129 159 54 100 2 1 465 147 305 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 477 207 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;