RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA631119" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA631119 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1151940 1151940 PRJNA631119_P_NODE_4381_length_534_cov_2.030369_g4266_i0 PRJNA631119 4381 534 2.030369 10.84217046 Gammaretrovirus 153135 Viruses Viruses 367 1.67e-114   NR ARB03489.1 11786 g4266 i0 98.3 11 178 3 100 0 534 1 760 937 ARB03489.1 putative gag-pro-pol polyprotein [Murine leukemia virus] diamond 5874 367 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
3154138 3154138 PRJNA631119_P_NODE_34703_length_246_cov_1.699422_g34585_i0 PRJNA631119 34703 246 1.699422 4.18057812 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.022   NTclustered gi|1815516747|gb|MT008126.1| 11676 g34585 i0 100 0.227642276422764 28 0 11 0 14 41 515 488 HIV-1 isolate NICED-1419 from India pol protein (pol) and gag protein (gag) genes, partial cds blastn 56 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
31198838 31198838 PRJNA631119_P_NODE_6475_length_455_cov_1.366492_g6357_i0 PRJNA631119 6475 455 1.366492 6.2175386 Gammaretrovirus 153135 Viruses Viruses 301 1.98e-93   NR AAA79247.1 11786 g6357 i0 97.4 12.9428571428571 151 4 99.6 0 2 454 235 385 AAA79247.1 putative reverse transcriptase [Murine leukemia virus] diamond 5889 304 0.990131578947368 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;