RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA631119", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA631119 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28691727 28691727 PRJNA631119_P_NODE_39327_length_241_cov_0.916667_g39209_i0 PRJNA631119 39327 241 0.916667 2.20916747 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 60.5 2e-8   NR BFO53114.1 2053555 g39209 i0 50 1.73029045643154 60 29 73.4 1 207 31 1 60 BFO53114.1 DEAD/DEAH box helicase [Fusobacteriaceae bacterium] diamond 417 60.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium
31692728 31692728 PRJNA631119_P_NODE_30397_length_252_cov_1.720670_g30279_i0 PRJNA631119 30397 252 1.72067 4.3360884 Fusobacteriota bacterium 2060921 Bacteria Bacteria 48.1 4.88e-4   NR HCB64081.1 2060921 g30279 i0 48.8 1.46428571428571 43 22 51.2 0 2 130 224 266 HCB64081.1 hypothetical protein [Fusobacteriota bacterium] diamond 369 48.1 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;