RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA630877", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA630877 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27838805 27838805 PRJNA630877_S_NODE_90584_length_253_cov_2.466981_g71447_i0 PRJNA630877 90584 253 2.466981 6.24146193 Campylobacterota bacterium 2026809 Bacteria Bacteria 43.5 0.0148   NR MEA3370023.1 2026809 g71447 i0 36.7 0.711462450592885 60 34 71.1 1 16 195 10 65 MEA3370023.1 spermidine synthase [Campylobacterota bacterium] diamond 180 43.5 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
30460434 30460434 PRJNA630877_S_NODE_111193_length_204_cov_1.417178_g92056_i0 PRJNA630877 111193 204 1.417178 2.89104312 Sulfurovaceae bacterium 2771475 Bacteria Bacteria 42 0.0413   NR MEJ2437003.1 2771475 g92056 i0 41.2 0.75 51 27 70.6 1 9 152 259 309 MEJ2437003.1 SulP family inorganic anion transporter [Sulfurovaceae bacterium] diamond 153 42 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae   Sulfurovaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;