RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA630877", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA630877 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7529635 7529635 PRJNA630877_S_NODE_80906_length_290_cov_3.714859_g61769_i0 PRJNA630877 80906 290 3.714859 10.7730911 Bdellovibrio 958 Bacteria Bacteria 254 6.86e-63   NTclustered gi|1210342126|gb|CP020946.1| 959 g61769 i0 85.484 263.31724137931 248 31 84 3 41 285 2950338 2950093 Bdellovibrio bacteriovorus strain SSB218315, complete genome blastn 76362 254 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
10807310 10807310 PRJNA630877_S_NODE_73109_length_331_cov_5.837931_g53972_i0 PRJNA630877 73109 331 5.837931 19.32355161 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 435 2.6500000000000003e-117   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g53972 i0 90.361 163.963746223565 332 30 100 2 1 331 666124 666454 Bdellovibrio sp. qaytius chromosome, complete genome blastn 54272 435 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
15905930 15905930 PRJNA630877_S_NODE_114453_length_198_cov_2.554140_g95316_i0 PRJNA630877 114453 198 2.55414 5.0571972 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 261 2.6200000000000002e-65   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g95316 i0 90.863 256.934343434343 197 15 99 3 1 196 3250779 3250585 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 50873 261 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
20278207 20278207 PRJNA630877_S_NODE_58676_length_453_cov_2.764563_g39591_i0 PRJNA630877 58676 453 2.764563 12.52347039 Bdellovibrio 958 Bacteria Bacteria 401 3.779999999999999e-107   NTclustered gi|578016248|gb|CP002190.1| 765869 g39591 i0 83.371 232.684326710817 445 63 97 10 13 453 611817 611380 Bdellovibrio bacteriovorus W, complete genome blastn 105406 401 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;