RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA630877", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 13 ✖

bioproject 1

  • PRJNA630877 · 13 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26859723 26859723 PRJNA630877_S_NODE_98001_length_232_cov_1.842932_g78864_i0 PRJNA630877 98001 232 1.842932 4.2756022400000004 Caenorhabditis nigoni 1611254 Nematoda Nematoda 42.7 0.00647   NR PIC41628.1 1611254 g78864 i0 33.8 0.84051724137931 65 41 84.1 1 36 230 20 82 PIC41628.1 hypothetical protein B9Z55_008980 [Caenorhabditis nigoni] diamond 195 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis nigoni
27030153 27030153 PRJNA630877_S_NODE_86182_length_268_cov_6.167401_g67045_i0 PRJNA630877 86182 268 6.167401 16.52863468 Metazoa 33208 Nematoda Nematoda 96.7 1.3700000000000002e-21   NR XP_042938937.1 6279 g67045 i0 100 7.0410447761194 45 0 50.4 0 267 133 218 262 XP_042938937.1 Uncharacterized protein BM_BM8269 [Brugia malayi] diamond 1887 96.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
27112341 27112341 PRJNA630877_S_NODE_106702_length_212_cov_15.584795_g87565_i0 PRJNA630877 106702 212 15.584795 33.0397654 Loa loa 7209 Nematoda Nematoda 53.5 3.4e-6   NR XP_020305707.1 7209 g87565 i0 47.1 4.40094339622642 51 24 72.2 1 10 162 242 289 XP_020305707.1 hypothetical protein LOAG_17927 [Loa loa] diamond 933 53.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
27757071 27757071 PRJNA630877_S_NODE_83844_length_277_cov_12.228814_g64707_i0 PRJNA630877 83844 277 12.228814 33.87381478 Metazoa 33208 Nematoda Nematoda 179 2.6699999999999993e-52   NR MCP9266445.1 6287 g64707 i0 96.5 377.220216606498 86 3 93.1 0 276 19 78 163 MCP9266445.1 Transforming protein RhoA [Dirofilaria immitis] diamond 104490 180 0.994444444444444 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis
28154905 28154905 PRJNA630877_S_NODE_136105_length_171_cov_1.184615_g116968_i0 PRJNA630877 136105 171 1.184615 2.02569165 Diploscapter pachys 2018661 Nematoda Nematoda 45.1 0.00215   NR PAV58789.1 2018661 g116968 i0 45.7 0.807017543859649 46 24 80.7 1 166 29 622 666 PAV58789.1 hypothetical protein WR25_11879 [Diploscapter pachys] diamond 138 45.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
28596871 28596871 PRJNA630877_S_NODE_142127_length_165_cov_1.419355_g122990_i0 PRJNA630877 142127 165 1.419355 2.34193575 Caenorhabditis brenneri 135651 Nematoda Nematoda 40.8 0.0353   NR EGT36957.1 135651 g122990 i0 41.9 0.781818181818182 43 25 78.2 0 164 36 48 90 EGT36957.1 hypothetical protein CAEBREN_16069 [Caenorhabditis brenneri] diamond 129 40.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
29543821 29543821 PRJNA630877_S_NODE_45490_length_650_cov_9.812808_g17178_i2 PRJNA630877 45490 650 9.812808 63.783252 Trichinella sp. T9 181606 Nematoda Nematoda 104 1.16e-24   NR KRX32182.1 181606 g17178 i2 96.6 0.544615384615385 59 2 27.2 0 473 649 67 125 KRX32182.1 Calcium/calmodulin-dependent protein kinase type II subunit gamma, partial [Trichinella sp. T9] diamond 354 104 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella sp. T9
29986085 29986085 PRJNA630877_S_NODE_138131_length_169_cov_1.031250_g118994_i0 PRJNA630877 138131 169 1.03125 1.7428125 Gnathostoma spinigerum 75299 Nematoda Nematoda 52.8 3.82e-6   NR MFH4980885.1 75299 g118994 i0 62.8 6.28402366863905 43 16 76.3 0 12 140 60 102 MFH4980885.1 hypothetical protein [Gnathostoma spinigerum] diamond 1062 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
30270696 30270696 PRJNA630877_S_NODE_111632_length_203_cov_1.648148_g92495_i0 PRJNA630877 111632 203 1.648148 3.34574044 Aphelenchoides besseyi 269767 Nematoda Nematoda 42.4 0.0312   NR KAI6216298.1 269767 g92495 i0 37.3 0.753694581280788 51 32 75.4 0 172 20 1009 1059 KAI6216298.1 hypothetical protein M3Y95_01285700 [Aphelenchoides besseyi] diamond 153 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
30270697 30270697 PRJNA630877_S_NODE_128972_length_179_cov_0.956522_g109835_i0 PRJNA630877 128972 179 0.956522 1.71217438 Trichinella britovi 45882 Nematoda Nematoda 46.6 6.91e-4   NR KRY51933.1 45882 g109835 i0 56.7 1.91061452513966 30 13 50.3 0 55 144 601 630 KRY51933.1 PiggyBac transposable element-derived protein 4, partial [Trichinella britovi] diamond 342 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi
30598831 30598831 PRJNA630877_S_NODE_144133_length_163_cov_1.598361_g124996_i0 PRJNA630877 144133 163 1.598361 2.60532843 Metazoa 33208 Nematoda Nematoda 52.4 3.34e-6   NR VDN25367.1 637853 g124996 i0 50 1.98773006134969 54 22 99.4 2 2 163 113 161 VDN25367.1 unnamed protein product, partial [Gongylonema pulchrum] diamond 324 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gongylonematidae Gongylonema Gongylonema pulchrum
31641931 31641931 PRJNA630877_S_NODE_116216_length_195_cov_9.928571_g97079_i0 PRJNA630877 116216 195 9.928571 19.36071345 root 1 Root_unresolved Root_unresolved 135 8.46e-39   NR NP_503011.1 6239 g97079 i0 98.5 199 65 1 100 0 195 1 15 79 NP_503011.1 ADP-ribosylation factor 6 [Caenorhabditis elegans] diamond 38805 136 0.992647058823529 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
31724290 31724290 PRJNA630877_S_NODE_87837_length_262_cov_6.656109_g68700_i0 PRJNA630877 87837 262 6.656109 17.43900558 Trichinella pseudospiralis 6337 Nematoda Nematoda 42.4 0.0465   NR KRY73976.1 6337 g68700 i0 80 0.229007633587786 20 4 22.9 0 2 61 158 177 KRY73976.1 ADP-ribosylation factor-like protein 8B-A [Trichinella pseudospiralis] diamond 60 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;