RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA630877", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 7 ✖

bioproject 1

  • PRJNA630877 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8256274 8256274 PRJNA630877_S_NODE_153687_length_155_cov_1.491228_g134550_i0 PRJNA630877 153687 155 1.491228 2.3114034 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 204 3.32e-48   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g134550 i0 98.276 181.374193548387 116 2 75 0 23 138 1103221 1103106 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 28113 204 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
18455174 18455174 PRJNA630877_S_NODE_105415_length_215_cov_1.954023_g86278_i0 PRJNA630877 105415 215 1.954023 4.20114945 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 329 7.82e-86   NTclustered gi|575456455|gb|CP007128.1| 861299 g86278 i0 96.04 180.125581395349 202 8 94 0 1 202 3043469 3043268 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 38727 329 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
28028527 28028527 PRJNA630877_S_NODE_99585_length_228_cov_1.941176_g80448_i0 PRJNA630877 99585 228 1.941176 4.42588128 Longimicrobium sp. 2029185 Bacteria Bacteria 45.1 0.00478   NR HEX8212631.1 2029185 g80448 i0 36.9 0.855263157894737 65 36 78.9 2 4 183 80 144 HEX8212631.1 IS1634 family transposase [Longimicrobium sp.] diamond 195 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28059928 28059928 PRJNA630877_S_NODE_41785_length_726_cov_10.655474_g24665_i0 PRJNA630877 41785 726 10.655474 77.35874124 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 46.6 0.0134   NR CAA9353806.1 246130 g24665 i0 38.8 0.479338842975207 116 63 44.6 2 452 129 21 136 CAA9353806.1 MAG: Transcriptional regulator, HxlR family, partial [uncultured Gemmatimonadaceae bacterium] diamond 348 46.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
28217574 28217574 PRJNA630877_S_NODE_146366_length_161_cov_1.591667_g127229_i0 PRJNA630877 146366 161 1.591667 2.56258387 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 41.2 0.043   NR MBT5056333.1 2026742 g127229 i0 60 0.559006211180124 30 8 48.4 1 66 143 168 197 MBT5056333.1 glycoside hydrolase family 3 protein [Gemmatimonadota bacterium] diamond 90 41.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31060599 31060599 PRJNA630877_S_NODE_119875_length_190_cov_2.026846_g100738_i0 PRJNA630877 119875 190 2.026846 3.8510074 Gemmatimonas sp. 1962908 Bacteria Bacteria 40.8 0.0495   NR MFN5600415.1 1962908 g100738 i0 36.5 0.821052631578947 52 33 82.1 0 17 172 15 66 MFN5600415.1 ferredoxin [Gemmatimonas sp.] diamond 156 40.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
32452344 32452344 PRJNA630877_S_NODE_86319_length_268_cov_1.859031_g67182_i0 PRJNA630877 86319 268 1.859031 4.98220308 Longimicrobiales bacterium 2910168 Bacteria Bacteria 43.5 0.0266   NR HSM05919.1 2910168 g67182 i0 35.2 0.604477611940298 54 31 60.4 1 253 92 212 261 HSM05919.1 FAD-binding oxidoreductase [Longimicrobiales bacterium] diamond 162 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;