RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA630877" and tax_clade = "Discoba"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA630877 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6981571 6981571 PRJNA630877_S_NODE_86846_length_266_cov_1.991111_g67709_i0 PRJNA630877 86846 266 1.991111 5.29635526 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.024   NTclustered gi|1031970260|gb|CP015694.1| 85057 g67709 i0 100 0.105263157894737 28 0 11 0 239 266 135285 135312 Trypanosoma cruzi cruzi strain Sylvio X10/cl1 chromosome TcI44, partial sequence blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
27460237 27460237 PRJNA630877_S_NODE_84683_length_274_cov_2.051502_g65546_i0 PRJNA630877 84683 274 2.051502 5.62111548 Acrasis kona 1008807 Heterolobosea other_Eukaryota 44.3 0.0143   NR KAL0486140.1 1008807 g65546 i0 45.5 0.481751824817518 44 23 47.1 1 191 63 53 96 KAL0486140.1 ribonuclease T2 [Acrasis kona] diamond 132 44.3 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29461489 29461489 PRJNA630877_S_NODE_160770_length_150_cov_1.036697_g141633_i0 PRJNA630877 160770 150 1.036697 1.5550455 Trypanosoma 5690 Euglenozoa other_Eukaryota 41.6 0.0201   NR RNF12499.1 5693 g141633 i0 42.3 2.08 52 24 100 3 1 150 125 172 RNF12499.1 trans-sialidase [Trypanosoma cruzi] diamond 312 41.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
29891463 29891463 PRJNA630877_S_NODE_110811_length_204_cov_21.797546_g91674_i0 PRJNA630877 110811 204 21.797546 44.46699384 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 62.8 2.74e-10   NR PWU83896.1 5693 g91674 i0 82.4 0.5 34 6 50 0 2 103 115 148 PWU83896.1 putative polyubiquitin [Trypanosoma cruzi] diamond 102 62.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;