RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA630877" and tax_clade = "Amoebozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA630877 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4430809 4430809 PRJNA630877_S_NODE_111104_length_204_cov_1.638037_g91967_i0 PRJNA630877 111104 204 1.638037 3.34159548 Physarum polycephalum 5791 Evosea other_Eukaryota 303 4.45e-78   NTclustered gi|3221|emb|V01159.1| 5791 g91967 i0 93.627 10.078431372549 204 12 100 1 1 204 2227 2025 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 2056 303 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
10807317 10807317 PRJNA630877_S_NODE_97649_length_233_cov_1.833333_g78512_i0 PRJNA630877 97649 233 1.833333 4.27166589 Physarum polycephalum 5791 Evosea other_Eukaryota 344 3.0699999999999998e-90   NTclustered gi|3221|emb|V01159.1| 5791 g78512 i0 93.249 5.88841201716738 237 11 100 5 1 233 2607 2372 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 1372 344 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
12082557 12082557 PRJNA630877_S_NODE_143550_length_164_cov_1.065041_g124413_i0 PRJNA630877 143550 164 1.065041 1.74666724 Physarum polycephalum 5791 Evosea other_Eukaryota 243 7.57e-60   NTclustered gi|3221|emb|V01159.1| 5791 g124413 i0 93.293 1 164 11 100 0 1 164 2638 2801 Physarum polycephalum gene encoding 5.8S rRNA and 26S rRNA blastn 164 243 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
19729731 19729731 PRJNA630877_S_NODE_148496_length_159_cov_1.974576_g129359_i0 PRJNA630877 148496 159 1.974576 3.13957584 Badhamia foliicola 647245 Evosea other_Eukaryota 281 1.54e-71   NTclustered gi|512391250|gb|KC759100.1| 647245 g129359 i0 98.734 96.7358490566038 158 2 99 0 1 158 933 1090 Badhamia foliicola strain 69058 small subunit ribosomal RNA gene, partial sequence blastn 15381 281 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Badhamia Badhamia foliicola
24103629 24103629 PRJNA630877_S_NODE_152639_length_156_cov_1.147826_g133502_i0 PRJNA630877 152639 156 1.147826 1.79060856 Physaraceae 1115744 Evosea other_Eukaryota 289 9e-74   NTclustered gi|2412461718|gb|ON632031.1| 5791 g133502 i0 100 71.9551282051282 156 0 100 0 1 156 590 435 Physarum polycephalum strain AI35.DP246 large subunit ribosomal RNA gene, partial sequence blastn 11225 289 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
28344127 28344127 PRJNA630877_S_NODE_77866_length_305_cov_1.484848_g58729_i0 PRJNA630877 77866 305 1.484848 4.5287864 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 43.5 0.0404   NR KAH3759863.1 1580589 g58729 i0 46.2 0.767213114754098 39 21 38.4 0 110 226 112 150 KAH3759863.1 Pol protein [Pelomyxa schiedti] diamond 234 43.5 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;