RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA630162" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA630162 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9531004 9531004 PRJNA630162_P_NODE_62108_length_224_cov_2.760000_g60585_i0 PRJNA630162 62108 224 2.76 6.1824 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.02   NTclustered gi|2806439464|ref|XM_068513892.1| 1144522 g60585 i0 100 0.125 28 0 13 0 87 114 96 69 Tritrichomonas foetus uncharacterized protein (TRFO_41629), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
12080789 12080789 PRJNA630162_P_NODE_107090_length_181_cov_2.174242_g105567_i0 PRJNA630162 107090 181 2.174242 3.93537802 Simplicimonas similis 723912 Parabasalia other_Eukaryota 207 3.0999999999999996e-49   NTclustered gi|530775354|gb|KC953859.1| 723912 g105567 i0 99.13 68.4640883977901 115 1 96 0 59 173 1383 1269 Simplicimonas similis isolate PCC6005 18S ribosomal RNA gene, partial sequence blastn 12392 207 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Simplicimonadidae Simplicimonas Simplicimonas similis
15179519 15179519 PRJNA630162_P_NODE_10952_length_577_cov_15.384470_g9513_i0 PRJNA630162 10952 577 15.38447 88.7683919 Trichonympha 63627 Parabasalia other_Eukaryota 84.2 2.02e-11   NTclustered gi|2637867527|gb|OR995892.1| 63628 g9513 i0 77.778 1.90814558058925 135 30 23 0 224 358 2320 2186 Trichonympha agilis clone Rtib_CC19_Para28S_sq1sz10684 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1101 84.2 1 Eukaryota Metamonada   Parabasalia   Trichonymphida Trichonymphidae Trichonympha Trichonympha agilis
15905244 15905244 PRJNA630162_P_NODE_48213_length_254_cov_1.775610_g46690_i0 PRJNA630162 48213 254 1.77561 4.5100494 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.023   NTclustered gi|2806448092|ref|XM_068499434.1| 1144522 g46690 i0 100 0.110236220472441 28 0 11 0 4 31 1728 1701 Tritrichomonas foetus uncharacterized protein (TRFO_17180), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
17180358 17180358 PRJNA630162_P_NODE_49594_length_250_cov_3.815920_g48071_i0 PRJNA630162 49594 250 3.81592 9.5398 Trichonympha turkestanica 3135423 Parabasalia other_Eukaryota 63.9 1.05e-5   NTclustered gi|2705618581|gb|PP554857.1| 3135423 g48071 i0 100 0.676 34 0 14 0 217 250 2504 2471 Trichonympha turkestanica voucher ANA-2 internal transcribed spacer region, partial sequence blastn 169 63.9 1 Eukaryota Metamonada   Parabasalia   Trichonymphida Trichonymphidae Trichonympha Trichonympha turkestanica
19002712 19002712 PRJNA630162_P_NODE_150055_length_164_cov_2.156522_g148532_i0 PRJNA630162 150055 164 2.156522 3.53669608 Tritrichomonas 5723 Parabasalia other_Eukaryota 272 9.65e-69   NTclustered gi|2263042901|gb|ON907819.1| 1915356 g148532 i0 100 89.9207317073171 147 0 90 0 18 164 1022 1168 Tritrichomonas musculus isolate LT small subunit ribosomal RNA gene, partial sequence blastn 14747 272 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
24103322 24103322 PRJNA630162_P_NODE_42559_length_272_cov_1.753363_g41036_i0 PRJNA630162 42559 272 1.753363 4.76914736 Trichomonadidae 181550 Parabasalia other_Eukaryota 470 5.81e-128   NTclustered gi|374706269|gb|JN619423.1| 5730 g41036 i0 98.496 97.7867647058823 266 4 98 0 1 266 392 127 Tetratrichomonas gallinarum isolate GB 1404/11 18S ribosomal RNA gene, partial sequence blastn 26598 470 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Tetratrichomonas Tetratrichomonas gallinarum
24827626 24827626 PRJNA630162_P_NODE_110260_length_179_cov_3.361538_g108737_i0 PRJNA630162 110260 179 3.361538 6.01715302 Holomastigotes sp. 3086161 Parabasalia other_Eukaryota 97.1 6.91e-16   NTclustered gi|2637867514|gb|OR995879.1| 3086161 g108737 i0 85.263 19.1843575418994 95 13 53 1 45 139 2099 2006 Holomastigotes sp. clone Hsjo_Para28S_sq53sz61 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3434 97.1 1 Eukaryota Metamonada   Parabasalia   Spirotrichonymphida Holomastigotoididae Holomastigotes Holomastigotes sp.
24828923 24828923 PRJNA630162_P_NODE_79360_length_202_cov_1.516340_g77837_i0 PRJNA630162 79360 202 1.51634 3.0630068 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 261 2.68e-65   NTclustered gi|2319615600|ref|XR_007835979.1| 412133 g77837 i0 90.452 9.7970297029703 199 17 98 2 5 202 852 1049 Trichomonas vaginalis G3 23S ribosomal RNA (TVAGG3_0034050), rRNA blastn 1979 261 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27396873 27396873 PRJNA630162_P_NODE_116303_length_176_cov_2.094488_g114780_i0 PRJNA630162 116303 176 2.094488 3.68629888 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 52.4 5.66e-6   NR XP_001304248.1 412133 g114780 i0 41.2 1.73863636363636 51 30 86.9 0 160 8 191 241 XP_001304248.1 ankyrin repeat family protein family [Trichomonas vaginalis G3] diamond 306 52.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30460280 30460280 PRJNA630162_P_NODE_157593_length_163_cov_0.912281_g156070_i0 PRJNA630162 157593 163 0.912281 1.48701803 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 56.2 2.11e-7   NR XP_068356941.1 1144522 g156070 i0 55.8 5.79754601226994 43 19 79.1 0 12 140 325 367 XP_068356941.1 Copine family protein [Tritrichomonas foetus] diamond 945 56.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32072191 32072191 PRJNA630162_P_NODE_148138_length_165_cov_0.896552_g146615_i0 PRJNA630162 148138 165 0.896552 1.4793108 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 65.1 1.64e-10   NR XP_067775788.1 135588 g146615 i0 61.2 0.890909090909091 49 19 89.1 0 148 2 125 173 XP_067775788.1 putative beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase [Histomonas meleagridis] diamond 147 65.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;