RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA630162" and tax_phylum = "Deferribacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA630162 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1151100 1151100 PRJNA630162_P_NODE_106661_length_181_cov_3.613636_g105138_i0 PRJNA630162 106661 181 3.613636 6.54068116 Mucispirillum 248038 Bacteria Bacteria 211 2.4e-50   NTclustered gi|2211256631|emb|OW091398.1| 248039 g105138 i0 89.349 169.861878453039 169 16 93 2 3 171 868247 868081 Mucispirillum schaedleri isolate Mucispirillum_schaedleri_DSM104751 genome assembly, chromosome: Mucispirillum_schaedleri_1 blastn 30745 211 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Mucispirillaceae Mucispirillum Mucispirillum schaedleri
1877926 1877926 PRJNA630162_P_NODE_150162_length_164_cov_2.034783_g148639_i0 PRJNA630162 150162 164 2.034783 3.33704412 Geovibrio thiophilus 139438 Bacteria Bacteria 126 7.9499999999999995e-25   NTclustered gi|1560273195|gb|CP035108.1| 139438 g148639 i0 81.699 735.628048780488 153 27 93 1 3 155 2284606 2284757 Geovibrio thiophilus strain DSM 11263 chromosome, complete genome blastn 120643 126 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Geovibrio Geovibrio thiophilus
8804102 8804102 PRJNA630162_P_NODE_125727_length_171_cov_2.606557_g124204_i0 PRJNA630162 125727 171 2.606557 4.45721247 Denitrovibrio 117999 Bacteria Bacteria 73.1 1.1e-8   NTclustered gi|470486080|ref|NR_076734.1| 118000 g124204 i0 89.831 16.5964912280702 59 3 34 3 108 165 1619 1675 Denitrovibrio acetiphilus strain N2460 23S ribosomal RNA gene, complete sequence blastn 2838 73.1 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Denitrovibrio Denitrovibrio acetiphilus
8804363 8804363 PRJNA630162_P_NODE_36427_length_296_cov_3.072874_g34904_i0 PRJNA630162 36427 296 3.072874 9.09570704 Mucispirillum 248038 Bacteria Bacteria 364 3.109999999999999e-96   NTclustered gi|2211256631|emb|OW091398.1| 248039 g34904 i0 89.116 456.125 294 30 99 2 2 294 867714 867422 Mucispirillum schaedleri isolate Mucispirillum_schaedleri_DSM104751 genome assembly, chromosome: Mucispirillum_schaedleri_1 blastn 135013 364 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Mucispirillaceae Mucispirillum Mucispirillum schaedleri
25378075 25378075 PRJNA630162_P_NODE_96760_length_187_cov_3.159420_g95237_i0 PRJNA630162 96760 187 3.15942 5.9081154 Flexistipes 2351 Bacteria Bacteria 182 1.96e-41   NTclustered gi|470488959|ref|NR_076897.1| 2352 g95237 i0 84.783 188.470588235294 184 25 97 3 1 181 1386 1203 Flexistipes sinusarabici strain MAS 10 23S ribosomal RNA gene, complete sequence blastn 35244 182 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Flexistipitaceae Flexistipes Flexistipes sinusarabici
27396892 27396892 PRJNA630162_P_NODE_134383_length_168_cov_1.689076_g132860_i0 PRJNA630162 134383 168 1.689076 2.83764768 Mucispirillum sp. 1965235 Bacteria Bacteria 80.1 7.46e-16   NR MDE7314106.1 1965235 g132860 i0 63 0.964285714285714 54 20 96.4 0 5 166 104 157 MDE7314106.1 acetate kinase [Mucispirillum sp.] diamond 162 80.1 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Mucispirillaceae Mucispirillum Mucispirillum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;