RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA630162" and tax_phylum = "Candidatus Berkelbacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Berkelbacteria · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA630162 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
601693 601693 PRJNA630162_P_NODE_141561_length_166_cov_2.547009_g140038_i0 PRJNA630162 141561 166 2.547009 4.22803494 Berkelbacteria bacterium GW2011_GWE1_39_12 1618337 Bacteria Bacteria 165 1.7100000000000002e-36   NTclustered gi|837351782|gb|CP011213.1| 1618337 g140038 i0 92.308 122.102409638554 117 7 69 1 21 135 137327 137443 Berkelbacteria bacterium GW2011_GWE1_39_12, complete genome blastn 20269 165 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Berkelbacteria bacterium GW2011_GWE1_39_12
19728191 19728191 PRJNA630162_P_NODE_130176_length_169_cov_2.116667_g128653_i0 PRJNA630162 130176 169 2.116667 3.57716723 uncultured Candidatus Berkelbacteria bacterium 1664347 Bacteria Bacteria 97.1 6.43e-16   NTclustered gi|2874253682|emb|OY969116.1| 1664347 g128653 i0 80.469 2.05917159763314 128 23 75 2 43 169 6229 6103 MAG: uncultured Candidatus Berkelbacteria bacterium isolate MFD04408.bin.c.6 genome assembly, chromosome: 1 blastn 348 97.1 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         uncultured Candidatus Berkelbacteria bacterium
23554171 23554171 PRJNA630162_P_NODE_130839_length_169_cov_1.525000_g129316_i0 PRJNA630162 130839 169 1.525 2.57725 Berkelbacteria bacterium GW2011_GWE1_39_12 1618337 Bacteria Bacteria 73.1 1.08e-8   NTclustered gi|837351782|gb|CP011213.1| 1618337 g129316 i0 82.353 1.33727810650888 85 13 50 2 77 160 136137 136220 Berkelbacteria bacterium GW2011_GWE1_39_12, complete genome blastn 226 73.1 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Berkelbacteria bacterium GW2011_GWE1_39_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;