RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA630162" and tax_phylum = "Calditrichota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Calditrichota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA630162 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3152284 3152284 PRJNA630162_P_NODE_103603_length_183_cov_2.477612_g102080_i0 PRJNA630162 103603 183 2.477612 4.53402996 Caldithrix abyssi 187145 Bacteria Bacteria 113 7.050000000000001e-21   NTclustered gi|1108618394|gb|CP018099.1| 880073 g102080 i0 93.421 207.704918032787 76 5 42 0 108 183 1053782 1053857 Caldithrix abyssi DSM 13497, complete genome blastn 38010 113 1 Bacteria   Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix abyssi
24828134 24828134 PRJNA630162_P_NODE_162400_length_161_cov_6.473214_g160877_i0 PRJNA630162 162400 161 6.473214 10.42187454 Caldithrix abyssi 187145 Bacteria Bacteria 158 2.76e-34   NTclustered gi|1108618394|gb|CP018099.1| 880073 g160877 i0 90.756 122.937888198758 119 9 73 2 43 160 1053740 1053857 Caldithrix abyssi DSM 13497, complete genome blastn 19793 158 1 Bacteria   Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix abyssi
26922440 26922440 PRJNA630162_P_NODE_100302_length_185_cov_2.514706_g98779_i0 PRJNA630162 100302 185 2.514706 4.6522061 Calditrichota bacterium 2212469 Bacteria Bacteria 73.2 3.18e-13   NR RMF56515.1 2212469 g98779 i0 57.4 5.88648648648649 61 26 98.9 0 1 183 146 206 RMF56515.1 MAG: polyribonucleotide nucleotidyltransferase [Calditrichota bacterium] diamond 1089 73.2 1 Bacteria   Pseudomonadati Calditrichota         Calditrichota bacterium
27460122 27460122 PRJNA630162_P_NODE_27803_length_345_cov_1.320946_g26281_i0 PRJNA630162 27803 345 1.320946 4.5572637 Calditrichota bacterium 2212469 Bacteria Bacteria 59.3 1.87e-7   NR RMD95280.1 2212469 g26281 i0 58.3 0.817391304347826 48 19 41.7 1 340 197 160 206 RMD95280.1 MAG: choice-of-anchor D domain-containing protein, partial [Calditrichota bacterium] diamond 282 59.3 1 Bacteria   Pseudomonadati Calditrichota         Calditrichota bacterium
29669792 29669792 PRJNA630162_P_NODE_51330_length_246_cov_1.964467_g49807_i0 PRJNA630162 51330 246 1.964467 4.83258882 Caldithrix abyssi 187145 Bacteria Bacteria 45.4 0.00413   NR WP_006928400.1 187145 g49807 i0 47.9 0.585365853658537 48 23 58.5 1 212 69 310 355 WP_006928400.1 hypothetical protein [Caldithrix abyssi] diamond 144 45.4 1 Bacteria   Pseudomonadati Calditrichota Calditrichia Calditrichales Calditrichaceae Caldithrix Caldithrix abyssi
30365447 30365447 PRJNA630162_P_NODE_150492_length_164_cov_1.739130_g148969_i0 PRJNA630162 150492 164 1.73913 2.8521732 Calditrichia bacterium 2268178 Bacteria Bacteria 56.6 1.61e-7   NR MEJ2637424.1 2268178 g148969 i0 50 0.98780487804878 54 26 98.8 1 162 1 414 466 MEJ2637424.1 multicopper oxidase domain-containing protein [Calditrichia bacterium] diamond 162 56.6 1 Bacteria   Pseudomonadati Calditrichota Calditrichia       Calditrichia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;