RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA627467" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA627467 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2426205 2426205 PRJNA627467_P_NODE_902_length_378_cov_4.787234_g835_i0 PRJNA627467 902 378 4.787234 18.09574452 Pseudomonadati 3379134 Bacteria Bacteria 484 2.9999999999999993e-132   NTclustered gi|2045533567|gb|CP074693.1| 35554 g835 i0 99.623 50.6031746031746 265 1 80 0 114 378 81527 81791 Geobacter sulfurreducens strain YM35 chromosome, complete genome blastn 19128 484 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
7528642 7528642 PRJNA627467_P_NODE_20486_length_156_cov_3.074766_g20417_i0 PRJNA627467 20486 156 3.074766 4.79663496 Geobacter 28231 Bacteria Bacteria 60.2 7.68e-5   NTclustered gi|470477521|ref|NR_076389.1| 28232 g20417 i0 100 0.615384615384615 32 0 21 0 17 48 1184 1215 Geobacter metallireducens strain GS-15 23S ribosomal RNA gene, complete sequence blastn 96 60.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter metallireducens
8252329 8252329 PRJNA627467_P_NODE_17587_length_164_cov_2.878261_g17518_i0 PRJNA627467 17587 164 2.878261 4.72034804 Desulfonema limicola 45656 Bacteria Bacteria 241 2.72e-59   NTclustered gi|2007129425|gb|CP061799.1| 45656 g17518 i0 94.268 163.310975609756 157 9 98 0 5 161 1685519 1685675 Desulfonema limicola strain 5ac10 chromosome, complete genome blastn 26783 241 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfonema Desulfonema limicola
21552617 21552617 PRJNA627467_P_NODE_10577_length_185_cov_6.227941_g10508_i0 PRJNA627467 10577 185 6.227941 11.52169085 Pseudomonadati 3379134 Bacteria Bacteria 326 8.430000000000001e-85   NTclustered gi|2045533567|gb|CP074693.1| 35554 g10508 i0 99.441 54.0432432432432 179 1 97 0 5 183 81563 81385 Geobacter sulfurreducens strain YM35 chromosome, complete genome blastn 9998 326 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
27901669 27901669 PRJNA627467_P_NODE_3905_length_316_cov_1.898876_g3837_i0 PRJNA627467 3905 316 1.898876 6.00044816 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 62.8 3.53e-9   NR MCP3898609.1 2049433 g3837 i0 84.4 0.607594936708861 32 5 30.4 0 312 217 178 209 MCP3898609.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 192 62.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
29101738 29101738 PRJNA627467_P_NODE_12028_length_181_cov_1.424242_g11959_i0 PRJNA627467 12028 181 1.424242 2.57787802 Candidatus Magnetomorum sp. HK-1 1509431 Bacteria Bacteria 109 5.870000000000001e-29   NR KPA10458.1 1509431 g11959 i0 94.4 0.895027624309392 54 3 89.5 0 179 18 22 75 KPA10458.1 hypothetical protein MHK_009337, partial [Candidatus Magnetomorum sp. HK-1] diamond 162 109 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Candidatus Magnetomoraceae Candidatus Magnetomorum Candidatus Magnetomorum sp. HK-1
29606442 29606442 PRJNA627467_P_NODE_10450_length_186_cov_1.875912_g10381_i0 PRJNA627467 10450 186 1.875912 3.48919632 Desulfoplanes sp. 3018273 Bacteria Bacteria 89 8.83e-19   NR MFA7166296.1 3018273 g10381 i0 70.7 0.935483870967742 58 17 93.5 0 184 11 83 140 MFA7166296.1 DEAD/DEAH box helicase [Desulfoplanes sp.] diamond 174 89 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfoplanaceae Desulfoplanes Desulfoplanes sp.
30112102 30112102 PRJNA627467_P_NODE_9632_length_189_cov_1.450000_g9563_i0 PRJNA627467 9632 189 1.45 2.7405 Geomonas sp. 2651584 Bacteria Bacteria 56.2 3.16e-7   NR HEY5514549.1 2651584 g9563 i0 44.3 1.95238095238095 61 34 96.8 0 4 186 269 329 HEY5514549.1 hypothetical protein [Geomonas sp.] diamond 369 56.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas sp.
30238591 30238591 PRJNA627467_P_NODE_5532_length_316_cov_1.539326_g5464_i0 PRJNA627467 5532 316 1.539326 4.86427016 Syntrophobacter fumaroxidans 119484 Bacteria Bacteria 58.5 8.43e-8   NR WP_011698751.1 119484 g5464 i0 75.8 0.626582278481013 33 8 31.3 0 315 217 97 129 WP_011698751.1 hypothetical protein [Syntrophobacter fumaroxidans] diamond 198 58.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter fumaroxidans
30680684 30680684 PRJNA627467_P_NODE_1053_length_359_cov_4.916129_g986_i0 PRJNA627467 1053 359 4.916129 17.64890311 Candidatus Magnetomorum sp. HK-1 1509431 Bacteria Bacteria 54.7 1.75e-6   NR KPA10458.1 1509431 g986 i0 73.5 0.284122562674095 34 9 28.4 0 102 1 1 34 KPA10458.1 hypothetical protein MHK_009337, partial [Candidatus Magnetomorum sp. HK-1] diamond 102 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Candidatus Magnetomoraceae Candidatus Magnetomorum Candidatus Magnetomorum sp. HK-1
30902144 30902144 PRJNA627467_P_NODE_19554_length_160_cov_3.711712_g19485_i0 PRJNA627467 19554 160 3.711712 5.9387392 Trichloromonas sp. 3069249 Bacteria Bacteria 59.3 1.66e-8   NR MDY0269059.1 3069249 g19485 i0 77.1 0.65625 35 8 65.6 0 158 54 1202 1236 MDY0269059.1 hypothetical protein [Trichloromonas sp.] diamond 105 59.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Trichloromonadaceae Trichloromonas Trichloromonas sp.
31249612 31249612 PRJNA627467_P_NODE_7975_length_218_cov_2.071006_g7906_i0 PRJNA627467 7975 218 2.071006 4.51479308 Smithella sp. 2053614 Bacteria Bacteria 97.8 1.49e-22   NR MEN6420691.1 2053614 g7906 i0 68.1 0.94954128440367 69 22 95 0 216 10 101 169 MEN6420691.1 MT-A70 family methyltransferase [Smithella sp.] diamond 207 97.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;