RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA627467" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA627467 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1875349 1875349 PRJNA627467_P_NODE_3902_length_316_cov_1.898876_g3834_i0 PRJNA627467 3902 316 1.898876 6.00044816 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 82.4 3.77e-11   NTclustered gi|2874254163|emb|OY970395.1| 412054 g3834 i0 94.34 43.7278481012658 53 3 17 0 258 310 1607631 1607683 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 13818 82.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
1875407 1875407 PRJNA627467_P_NODE_9382_length_190_cov_1.418440_g9313_i0 PRJNA627467 9382 190 1.41844 2.695036 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 113 2.17e-27   NR PYP42654.1 2026742 g9313 i0 90.2 0.963157894736842 61 6 96.3 0 184 2 239 299 PYP42654.1 MAG: multidrug transporter AcrB, partial [Gemmatimonadota bacterium] diamond 183 113 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
8803706 8803706 PRJNA627467_P_NODE_17607_length_164_cov_2.608696_g17538_i0 PRJNA627467 17607 164 2.608696 4.27826144 Pseudomonadati 3379134 Bacteria Bacteria 100 3.5299999999999995e-23   NR HET9011844.1 2026741 g17538 i0 92.5 3.8780487804878 53 4 97 0 5 163 140 192 HET9011844.1 FAD-dependent oxidoreductase [Gemmatimonadaceae bacterium] diamond 636 101 0.99009900990099 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
13353377 13353377 PRJNA627467_P_NODE_17231_length_165_cov_1.724138_g17162_i0 PRJNA627467 17231 165 1.724138 2.8448277 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 254 3.52e-63   NTclustered gi|2874253728|emb|OY969570.1| 412054 g17162 i0 95.031 189.690909090909 161 8 98 0 1 161 173814 173654 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 31299 254 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
15902033 15902033 PRJNA627467_P_NODE_10773_length_185_cov_1.485294_g10704_i0 PRJNA627467 10773 185 1.485294 2.7477939 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 167 5.41e-37   NTclustered gi|2874253995|emb|OY970320.1| 246130 g10704 i0 84.302 3.38378378378378 172 25 92 2 2 172 3235741 3235571 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 626 167 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
17177191 17177191 PRJNA627467_P_NODE_5994_length_315_cov_1.969925_g5926_i0 PRJNA627467 5994 315 1.969925 6.20526375 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 111 4.8e-20   NTclustered gi|2107779373|gb|CP070829.1| 2448054 g5926 i0 87 3.70793650793651 100 11 31 2 217 315 3228492 3228394 MAG: Gemmatimonadales bacterium isolate bin109 chromosome blastn 1168 111 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
26827568 26827568 PRJNA627467_P_NODE_3981_length_316_cov_1.872659_g3913_i0 PRJNA627467 3981 316 1.872659 5.91760244 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 68.6 7.09e-11   NR HTI64292.1 2026741 g3913 i0 100 0.30379746835443 32 0 30.4 0 100 5 125 156 HTI64292.1 PQQ-dependent sugar dehydrogenase [Gemmatimonadaceae bacterium] diamond 96 68.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30504194 30504194 PRJNA627467_P_NODE_4313_length_316_cov_1.775281_g4245_i0 PRJNA627467 4313 316 1.775281 5.60988796 Pseudomonadati 3379134 Bacteria Bacteria 59.7 9.75e-8   NR HMI57385.1 2026741 g4245 i0 84.4 5.16455696202532 32 5 30.4 0 100 5 353 384 HMI57385.1 ATP-binding cassette domain-containing protein [Gemmatimonadaceae bacterium] diamond 1632 59.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32609810 32609810 PRJNA627467_P_NODE_16140_length_167_cov_2.559322_g16071_i0 PRJNA627467 16140 167 2.559322 4.27406774 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 112 1.6600000000000003e-27   NR HEU4649526.1 2448054 g16071 i0 100 0.970059880239521 54 0 97 0 1 162 338 391 HEU4649526.1 amidophosphoribosyltransferase [Gemmatimonadales bacterium] diamond 162 112 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;