RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA627467", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA627467 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23551838 23551838 PRJNA627467_P_NODE_8539_length_204_cov_1.541935_g8470_i0 PRJNA627467 8539 204 1.541935 3.1455474 Fretibacterium fastidiosum 651822 Bacteria Bacteria 255 1.26e-63   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g8470 i0 91.005 5.97549019607843 189 17 93 0 16 204 69809 69621 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 1219 255 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
32008878 32008878 PRJNA627467_P_NODE_16778_length_166_cov_1.547009_g16709_i0 PRJNA627467 16778 166 1.547009 2.56803494 Fretibacterium fastidiosum 651822 Bacteria Bacteria 50.4 2.43e-5   NR WP_409152565.1 651822 g16709 i0 57.8 3.43373493975904 45 17 81.3 1 6 140 276 318 WP_409152565.1 Synerg-CTERM sorting domain-containing protein [Fretibacterium fastidiosum] diamond 570 50.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;