RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA627467" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA627467 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17177149 17177149 PRJNA627467_P_NODE_2134_length_316_cov_3.056180_g2066_i0 PRJNA627467 2134 316 3.05618 9.6575288 Natrinema zhouii 1710539 Archaea Archaea 52.8 0.03   NTclustered gi|1877687633|gb|CP059154.1| 1710539 g2066 i0 100 0.0886075949367089 28 0 9 0 248 275 2701479 2701452 Natrinema zhouii strain YPL30 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema zhouii
30460167 30460167 PRJNA627467_P_NODE_19773_length_159_cov_4.054545_g19704_i0 PRJNA627467 19773 159 4.054545 6.44672655 Methanobrevibacter sp. 66852 Archaea Archaea 41.2 0.0431   NR WP_407394011.1 66852 g19704 i0 52.8 0.679245283018868 36 13 60.4 1 144 49 349 384 WP_407394011.1 RNA-guided endonuclease InsQ/TnpB family protein [Methanobrevibacter sp.] diamond 108 41.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32767156 32767156 PRJNA627467_P_NODE_18900_length_162_cov_0.902655_g18831_i0 PRJNA627467 18900 162 0.902655 1.4623011 Halorubrum 56688 Archaea Archaea 73.6 1.5700000000000001e-13   NR WP_095638111.1 56688 g18831 i0 100 0.703703703703704 38 0 70.4 0 44 157 1 38 WP_095638111.1 MULTISPECIES: glutamate dehydrogenase GdhB [Halorubrum] diamond 114 73.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;