RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA627467", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA627467 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8252391 8252391 PRJNA627467_P_NODE_3847_length_316_cov_1.917603_g3779_i0 PRJNA627467 3847 316 1.917603 6.05962548 Mycoplasmopsis cynos 171284 Bacteria Bacteria 180 1.3e-40   NTclustered gi|2303515627|gb|CP103992.1| 171284 g3779 i0 100 16.5822784810127 97 0 61 0 217 313 773835 773739 Mycoplasmopsis cynos strain 16-078726-2 chromosome blastn 5240 180 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis cynos
29511991 29511991 PRJNA627467_P_NODE_15590_length_169_cov_1.666667_g15521_i0 PRJNA627467 15590 169 1.666667 2.81666723 Mesoplasma melaleucae 81459 Bacteria Bacteria 43.9 0.00539   NR WP_028123952.1 81459 g15521 i0 46.7 0.798816568047337 45 24 79.9 0 151 17 219 263 WP_028123952.1 lipoate--protein ligase [Mesoplasma melaleucae] diamond 135 43.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma melaleucae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;