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contig_metadata

2 rows where bioproject = "PRJNA627467", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA627467 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9527688 9527688 PRJNA627467_P_NODE_8988_length_194_cov_1.565517_g8919_i0 PRJNA627467 8988 194 1.565517 3.03710298 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 346 6.860000000000001e-91   NTclustered gi|325194239|emb|FR825095.1| 890382 g8919 i0 99.474 97.860824742268 190 1 98 0 5 194 1438 1249 Albugo laibachii Nc14, genomic contig CONTIG_1625_NC14_v4_1818_619 blastn 18985 346 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
30902141 30902141 PRJNA627467_P_NODE_14334_length_173_cov_1.612903_g14265_i0 PRJNA627467 14334 173 1.612903 2.79032219 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 120 1.36e-31   NR KAG1713264.1 4784 g14265 i0 98.2 0.953757225433526 55 1 95.4 0 3 167 197 251 KAG1713264.1 hypothetical protein DVH05_000984 [Phytophthora capsici] diamond 165 120 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;