RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA627467", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA627467 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12078518 12078518 PRJNA627467_P_NODE_15050_length_171_cov_1.090164_g14981_i0 PRJNA627467 15050 171 1.090164 1.86418044 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 239 1.02e-58   NTclustered gi|2862228858|gb|PQ645492.1| 2856 g14981 i0 92.308 98.906432748538 169 11 98 2 1 167 3479 3647 Cylindrotheca closterium isolate AGSB0341 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16913 239 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
28059648 28059648 PRJNA627467_P_NODE_12945_length_178_cov_1.286822_g12876_i0 PRJNA627467 12945 178 1.286822 2.29054316 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 68.9 8.74e-12   NR EJK58699.1 159749 g12876 i0 60.7 1.8876404494382 56 22 94.4 0 170 3 1639 1694 EJK58699.1 hypothetical protein THAOC_21152 [Thalassiosira oceanica] diamond 336 68.9 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica
32767153 32767153 PRJNA627467_P_NODE_13740_length_175_cov_1.611111_g13671_i0 PRJNA627467 13740 175 1.611111 2.81944425 Fistulifera solaris 1519565 SAR_Eukaryotes SAR_Eukaryotes 65.1 1.9e-10   NR GAX14227.1 1519565 g13671 i0 61.1 0.925714285714286 54 20 90.9 1 170 12 388 441 GAX14227.1 hypothetical protein FisN_1Hu418 [Fistulifera solaris] diamond 162 65.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Fistulifera Fistulifera solaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;