RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA627467", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA627467 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30428521 30428521 PRJNA627467_P_NODE_9553_length_189_cov_2.428571_g9484_i0 PRJNA627467 9553 189 2.428571 4.58999919 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 65.9 1.17e-10   NR MBM3288983.1 2030809 g9484 i0 48.3 1.92063492063492 60 31 95.2 0 187 8 180 239 MBM3288983.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 363 65.9 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
30838884 30838884 PRJNA627467_P_NODE_4474_length_316_cov_1.741573_g4406_i0 PRJNA627467 4474 316 1.741573 5.50337068 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 52.4 2.55e-5   NR HNR35266.1 2030809 g4406 i0 78.8 2.15506329113924 33 7 31.3 0 100 2 111 143 HNR35266.1 sigma-54 dependent transcriptional regulator [Candidatus Hydrogenedentota bacterium] diamond 681 52.4 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31091660 31091660 PRJNA627467_P_NODE_5575_length_316_cov_1.524345_g5507_i0 PRJNA627467 5575 316 1.524345 4.8169302 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 59.3 1.07e-7   NR HOJ33405.1 2030809 g5507 i0 81.3 1.51898734177215 32 6 30.4 0 99 4 18 49 HOJ33405.1 aldo/keto reductase [Candidatus Hydrogenedentota bacterium] diamond 480 59.3 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32420251 32420251 PRJNA627467_P_NODE_4379_length_316_cov_1.760300_g4311_i0 PRJNA627467 4379 316 1.7603 5.562548 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 45.1 0.00145   NR MBX7255403.1 2030809 g4311 i0 62.5 0.607594936708861 32 12 30.4 0 100 5 28 59 MBX7255403.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein [Candidatus Hydrogenedentota bacterium] diamond 192 45.1 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32452077 32452077 PRJNA627467_P_NODE_11019_length_184_cov_2.081481_g10950_i0 PRJNA627467 11019 184 2.081481 3.82992504 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 75.9 3.59e-14   NR HOV73569.1 2030809 g10950 i0 63.3 1.95652173913043 60 22 97.8 0 2 181 628 687 HOV73569.1 PAS domain S-box protein [Candidatus Hydrogenedentota bacterium] diamond 360 75.9 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;