RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA627467" and tax_clade = "Discoba"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA627467 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3150157 3150157 PRJNA627467_P_NODE_8263_length_210_cov_3.496894_g8194_i0 PRJNA627467 8263 210 3.496894 7.3434774 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 368 1.61e-97   NTclustered gi|701726755|gb|KM220721.1| 500012 g8194 i0 99.024 39.7333333333333 205 2 98 0 2 206 361 157 Allovahlkampfia sp. strain SO/1P isolate 164A 18S ribosomal RNA gene, partial sequence blastn 8344 368 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P
24825382 24825382 PRJNA627467_P_NODE_2380_length_316_cov_2.685393_g2312_i0 PRJNA627467 2380 316 2.685393 8.48584188 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 182 3.62e-41   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g2312 i0 100 26.1645569620253 98 0 63 0 216 313 1948 1851 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8268 182 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
28944110 28944110 PRJNA627467_P_NODE_20128_length_158_cov_2.119266_g20059_i0 PRJNA627467 20128 158 2.119266 3.34844028 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 40.8 0.0464   NR XP_002683582.1 5762 g20059 i0 40.4 0.892405063291139 47 28 89.2 0 18 158 110 156 XP_002683582.1 uncharacterized protein NAEGRDRAFT_61569 [Naegleria gruberi] diamond 141 40.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;