RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA627467", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA627467 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15902214 15902214 PRJNA627467_P_NODE_6173_length_312_cov_2.653992_g6105_i0 PRJNA627467 6173 312 2.653992 8.28045504 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 145 4.68e-30   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g6105 i0 92.929 33.9070512820513 99 7 63 0 213 311 890219 890317 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 10579 145 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
21001566 21001566 PRJNA627467_P_NODE_20957_length_154_cov_3.142857_g20888_i0 PRJNA627467 20957 154 3.142857 4.83999978 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 132 1.58e-26   NTclustered gi|2621702180|emb|OY760177.1| 2044595 g20888 i0 90.099 11.1233766233766 101 10 66 0 7 107 333608 333508 MAG: Candidatus Gracilibacteria bacterium isolate ba77f91b-d06a-446b-8ae6-f296fa1be4ef genome assembly, chromosome: 1 blastn 1713 132 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;