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contig_metadata

13 rows where bioproject = "PRJNA627467" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 13 ✖

bioproject 1

  • PRJNA627467 · 13 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1875377 1875377 PRJNA627467_P_NODE_6602_length_275_cov_38.827434_g6533_i0 PRJNA627467 6602 275 38.827434 106.7754435 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 372 1.71e-98   NTclustered gi|300078498|gb|GU001160.1| 5755 g6533 i0 91.034 1.05454545454545 290 5 100 16 1 275 5933 5650 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 290 372 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4426914 4426914 PRJNA627467_P_NODE_7724_length_225_cov_5.579545_g7655_i0 PRJNA627467 7724 225 5.579545 12.55397625 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 340 3.809999999999999e-89   NTclustered gi|300078498|gb|GU001160.1| 5755 g7655 i0 94.222 20.0488888888889 225 9 98 3 4 224 5420 5644 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4511 340 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6254426 6254426 PRJNA627467_P_NODE_13785_length_175_cov_1.587302_g13716_i0 PRJNA627467 13785 175 1.587302 2.7777785 Vannella 95228 Discosea other_Eukaryota 300 4.77e-77   NTclustered gi|62865937|gb|AY929912.1| 325078 g13716 i0 98.256 45.48 172 2 98 1 5 175 394 565 Vannella sp. strain CH88/I 18S small subunit ribosomal RNA gene, partial sequence blastn 7959 300 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. strain CH88/I
10803283 10803283 PRJNA627467_P_NODE_12069_length_181_cov_1.181818_g12000_i0 PRJNA627467 12069 181 1.181818 2.13909058 Stemonitis pallida 2461415 Evosea other_Eukaryota 322 1.06e-83   NTclustered gi|1885992014|gb|MT846406.1| 2461415 g12000 i0 98.889 7.98895027624309 180 2 99 0 1 180 1161 982 Stemonitis pallida isolate 10667 small subunit ribosomal RNA gene, partial sequence blastn 1446 322 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonitis Stemonitis pallida
10803425 10803425 PRJNA627467_P_NODE_3869_length_316_cov_1.906367_g3801_i0 PRJNA627467 3869 316 1.906367 6.02411972 Vannella septentrionalis 197531 Discosea other_Eukaryota 187 7.77e-43   NTclustered gi|300078499|gb|GU001161.1| 197531 g3801 i0 100 32.4145569620253 101 0 62 0 216 316 1804 1904 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10243 187 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
10803466 10803466 PRJNA627467_P_NODE_7389_length_236_cov_9.508021_g7320_i0 PRJNA627467 7389 236 9.508021 22.43892956 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 333 6.749999999999999e-87   NTclustered gi|300078498|gb|GU001160.1| 5755 g7320 i0 92.241 1.16101694915254 232 14 97 3 7 236 7831 7602 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 274 333 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14628182 14628182 PRJNA627467_P_NODE_5372_length_316_cov_1.573034_g5304_i0 PRJNA627467 5372 316 1.573034 4.97078744 Endostelium zonatum 668362 Discosea other_Eukaryota 180 1.3e-40   NTclustered gi|260909283|gb|FJ766469.1| 668362 g5304 i0 100 22.876582278481 97 0 61 0 4 100 1247 1343 Endostelium zonatum strain LHI05M6a-1 culture-collection ATCC:PRA-191 clone 1 18S ribosomal RNA gene, partial sequence blastn 7229 180 1 Eukaryota Amoebozoa   Discosea Flabellinia     Endostelium Endostelium zonatum
15179208 15179208 PRJNA627467_P_NODE_18992_length_161_cov_4.383929_g18923_i0 PRJNA627467 18992 161 4.383929 7.05812569 Didymium 5792 Evosea other_Eukaryota 102 1.31e-17   NTclustered gi|2687|emb|X60210.1| 5793 g18923 i0 94.118 0.84472049689441 68 2 42 1 90 157 2184 2119 D.iridis LSU rRNA gene blastn 136 102 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
17177119 17177119 PRJNA627467_P_NODE_18994_length_161_cov_4.339286_g18925_i0 PRJNA627467 18994 161 4.339286 6.98625046 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 111 2.18e-20   NTclustered gi|300078498|gb|GU001160.1| 5755 g18925 i0 79.651 1.06832298136646 172 21 100 11 1 161 7049 6881 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 172 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
21001447 21001447 PRJNA627467_P_NODE_11077_length_184_cov_1.688889_g11008_i0 PRJNA627467 11077 184 1.688889 3.10755576 Fuligo septica 159720 Evosea other_Eukaryota 316 5.04e-82   NTclustered gi|37515398|emb|AJ584697.1| 159720 g11008 i0 98.343 44.6847826086956 181 1 98 2 1 181 6289 6111 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 8222 316 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
22276273 22276273 PRJNA627467_P_NODE_15958_length_168_cov_1.403361_g15889_i0 PRJNA627467 15958 168 1.403361 2.35764648 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 268 1.29e-67   NTclustered gi|470528212|ref|XM_004367813.1| 1257118 g15889 i0 96.319 0.970238095238095 163 6 97 0 3 165 887 1049 Acanthamoeba castellanii str. Neff ribosomal protein L4/L1 family (ACA1_288360), partial mRNA blastn 163 268 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22276419 22276419 PRJNA627467_P_NODE_9058_length_193_cov_1.361111_g8989_i0 PRJNA627467 9058 193 1.361111 2.62694423 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 255 1.18e-63   NTclustered gi|300078498|gb|GU001160.1| 5755 g8989 i0 93.143 2.49740932642487 175 10 90 2 17 189 6319 6145 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 482 255 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24102761 24102761 PRJNA627467_P_NODE_519_length_461_cov_13.009709_g454_i0 PRJNA627467 519 461 13.009709 59.97475849 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 497 4.78e-136   NTclustered gi|300078498|gb|GU001160.1| 5755 g454 i0 86.538 23.4533622559653 468 44 99 14 1 458 4487 4029 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10812 497 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;