RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA624323" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA624323 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4423982 4423982 PRJNA624323_P_NODE_9664_length_237_cov_2.707317_g9502_i0 PRJNA624323 9664 237 2.707317 6.41634129 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 379 8.589999999999998e-101   NTclustered gi|2874253789|emb|OY969773.1| 412054 g9502 i0 95.781 148.662447257384 237 6 99 3 1 235 421791 422025 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 35233 379 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
19722988 19722988 PRJNA624323_P_NODE_8616_length_247_cov_0.885057_g8454_i0 PRJNA624323 8616 247 0.885057 2.18609079 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 291 4.35e-74   NTclustered gi|2874253978|emb|OY970303.1| 412054 g8454 i0 91.284 129.514170040486 218 11 86 8 35 247 1903116 1902902 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 31990 291 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
23548870 23548870 PRJNA624323_P_NODE_7279_length_263_cov_2.142105_g7117_i0 PRJNA624323 7279 263 2.142105 5.63373615 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 248 2.8499999999999997e-61   NTclustered gi|575456455|gb|CP007128.1| 861299 g7117 i0 84.766 67.8783269961977 256 30 95 9 13 263 3042668 3042417 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 17852 248 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;