RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA624323" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA624323 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
596383 596383 PRJNA624323_P_NODE_8561_length_247_cov_0.885057_g8399_i0 PRJNA624323 8561 247 0.885057 2.18609079 Peredibacter starrii 28202 Bacteria Bacteria 407 4.14e-109   NTclustered gi|2631252187|gb|CP139487.1| 28202 g8399 i0 96.356 31.8906882591093 247 9 100 0 1 247 512231 512477 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 7877 407 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
9524733 9524733 PRJNA624323_P_NODE_6648_length_277_cov_3.828431_g6486_i0 PRJNA624323 6648 277 3.828431 10.60475387 Peredibacter starrii 28202 Bacteria Bacteria 477 3.5499999999999992e-130   NTclustered gi|2631252187|gb|CP139487.1| 28202 g6486 i0 97.826 219.223826714801 276 6 99 0 2 277 511856 511581 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 60725 477 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
12075747 12075747 PRJNA624323_P_NODE_9550_length_241_cov_0.916667_g9388_i0 PRJNA624323 9550 241 0.916667 2.20916747 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 193 1.23e-44   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g9388 i0 83.981 33.2448132780083 206 28 84 4 40 241 3448266 3448470 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 8012 193 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
13350536 13350536 PRJNA624323_P_NODE_3251_length_409_cov_1.571429_g3090_i0 PRJNA624323 3251 409 1.571429 6.42714461 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 590 6.729999999999998e-164   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g3090 i0 92.683 100.689486552567 410 29 100 1 1 409 3447261 3446852 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 41182 590 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
19001623 19001623 PRJNA624323_P_NODE_9955_length_226_cov_2.483660_g9793_i0 PRJNA624323 9955 226 2.48366 5.6130716 Bdellovibrio 958 Bacteria Bacteria 230 8.659999999999999e-56   NTclustered gi|2800948966|gb|CP168973.1| 959 g9793 i0 90.751 54.6238938053097 173 14 77 2 21 193 816492 816662 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 12345 230 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
29101704 29101704 PRJNA624323_P_NODE_8448_length_248_cov_0.880000_g8286_i0 PRJNA624323 8448 248 0.88 2.1824 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 168 1.4699999999999998e-48   NR MBX2993231.1 2026715 g8286 i0 97.6 0.991935483870968 82 2 99.2 0 247 2 269 350 MBX2993231.1 site-specific integrase [Pseudobdellovibrionaceae bacterium] diamond 246 168 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;