RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA624323", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA624323 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3147248 3147248 PRJNA624323_P_NODE_903_length_744_cov_3.290611_g757_i0 PRJNA624323 903 744 3.290611 24.48214584 Nitrospira sp. 70125 Bacteria Bacteria 1286 0   NTclustered gi|2290907019|gb|CP060499.1| 70125 g757 i0 97.849 454.366935483871 744 16 100 0 1 744 2683130 2683873 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 338049 1286 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
22273498 22273498 PRJNA624323_P_NODE_7818_length_253_cov_1.194444_g7656_i0 PRJNA624323 7818 253 1.194444 3.02194332 Nitrospira sp. 70125 Bacteria Bacteria 363 9.339999999999996e-96   NTclustered gi|2863129529|dbj|AP038806.1| 70125 g7656 i0 92.49 60.7233201581028 253 19 100 0 1 253 3062817 3063069 MAG: Nitrospira sp. NFB02 DNA, complete genome blastn 15363 363 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
23548864 23548864 PRJNA624323_P_NODE_599_length_886_cov_2.389914_g476_i0 PRJNA624323 599 886 2.389914 21.17463804 Nitrospira sp. 70125 Bacteria Bacteria 1509 0   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g476 i0 97.404 535.154627539503 886 23 100 0 1 886 2094005 2094890 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 474147 1509 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;