RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA624323", tax_kingdom = "Fungi" and tax_phylum = "Zoopagomycota"

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tax_superkingdom 1

tax_phylum 1

  • Zoopagomycota · 1 ✖

tax_kingdom 1

  • Fungi · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA624323 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5699906 5699906 PRJNA624323_P_NODE_5285_length_315_cov_4.136364_g5123_i0 PRJNA624323 5285 315 4.136364 13.0295466 Smittium mucronatum 133383 Fungi Fungi 100 1.04e-16   NTclustered gi|666440451|gb|KF848910.1| 133383 g5123 i0 86.17 11.8666666666667 94 11 30 1 1 94 2808 2899 Smittium mucronatum strain FRA-12-3 28S ribosomal RNA gene, partial sequence blastn 3738 100 1 Eukaryota Opisthokonta Fungi Zoopagomycota Harpellomycetes Harpellales Legeriomycetaceae Smittium Smittium mucronatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;