RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA624323", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA624323 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
596352 596352 PRJNA624323_P_NODE_1781_length_552_cov_2.501044_g1622_i0 PRJNA624323 1781 552 2.501044 13.80576288 Microvenator marinus 2600177 Bacteria Bacteria 667 0   NTclustered gi|1722470586|gb|CP042467.1| 2600177 g1622 i0 88.686 419.771739130435 548 60 99 2 5 552 703887 703342 Microvenator marinus strain V1718 chromosome, complete genome blastn 231714 667 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
4423957 4423957 PRJNA624323_P_NODE_5124_length_320_cov_6.631579_g4962_i0 PRJNA624323 5124 320 6.631579 21.2210528 uncultured delta proteobacterium 34034 Bacteria Bacteria 143 1.73e-29   NTclustered gi|2874253659|emb|OY969087.1| 34034 g4962 i0 75.152 64.446875 330 68 100 12 1 320 1500516 1500191 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 20623 143 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
13350555 13350555 PRJNA624323_P_NODE_7091_length_267_cov_1.969072_g6929_i0 PRJNA624323 7091 267 1.969072 5.25742224 uncultured delta proteobacterium 34034 Bacteria Bacteria 339 1.6699999999999998e-88   NTclustered gi|374854163|dbj|AP011765.1| 34034 g6929 i0 89.513 133.7265917603 267 28 100 0 1 267 13438 13172 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 35705 339 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
15899309 15899309 PRJNA624323_P_NODE_6673_length_277_cov_1.509804_g6511_i0 PRJNA624323 6673 277 1.509804 4.18215708 uncultured delta proteobacterium 34034 Bacteria Bacteria 442 1.2899999999999993e-119   NTclustered gi|374854163|dbj|AP011765.1| 34034 g6511 i0 95.636 99.3935018050542 275 12 99 0 1 275 11607 11333 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 27532 442 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;