RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA624323" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA624323 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13350580 13350580 PRJNA624323_P_NODE_9931_length_227_cov_2.785714_g9769_i0 PRJNA624323 9931 227 2.785714 6.32357078 Trebouxia aggregata 160068 Plants Plants 403 4.85e-108   NTclustered gi|162134340|gb|EU123979.1| 160068 g9769 i0 98.684 130.960352422907 228 2 100 1 1 227 1821 2048 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 29728 403 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
15899313 15899313 PRJNA624323_P_NODE_7853_length_252_cov_1.720670_g7691_i0 PRJNA624323 7853 252 1.72067 4.3360884 Myrmecia israelensis 3171 Plants Plants 414 2.53e-111   NTclustered gi|2724824566|gb|PP746563.1| 3171 g7691 i0 97.908 115.888888888889 239 5 95 0 14 252 6437 6199 Myrmecia israelensis culture UTEX:1181 mitochondrion, complete genome blastn 29204 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
18448448 18448448 PRJNA624323_P_NODE_8555_length_247_cov_0.885057_g8393_i0 PRJNA624323 8555 247 0.885057 2.18609079 Trebouxia sp. SL0000003 3350044 Plants Plants 182 2.73e-41   NTclustered gi|2917929626|emb|OZ234914.1| 3350044 g8393 i0 87.421 0.643724696356275 159 19 64 1 4 162 1636822 1636979 Trebouxia sp. SL0000003 genome assembly, chromosome: 9 blastn 159 182 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
20998678 20998678 PRJNA624323_P_NODE_6077_length_291_cov_6.385321_g5915_i0 PRJNA624323 6077 291 6.385321 18.58128411 Trebouxia lynnae 1825957 Plants Plants 516 7.95e-142   NTclustered gi|1016111943|gb|KU716051.1| 1825957 g5915 i0 98.625 16.5395189003436 291 4 100 0 1 291 6971 6681 Trebouxia lynnae 26S-18S intergenic spacer region, partial sequence; 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence; and 26S-18S rRNA intergenic spacer region, partial sequence blastn 4813 516 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
24102016 24102016 PRJNA624323_P_NODE_7879_length_251_cov_42.179775_g7717_i0 PRJNA624323 7879 251 42.179775 105.87123525 Trebouxia 13786 Plants Plants 464 2.47e-126   NTclustered gi|1545969|emb|Z68705.1| 53268 g7717 i0 100 100 251 0 100 0 1 251 1205 955 T.arboricola (SAG 219-1a) 5.8S, 18S and 26S rRNA genes blastn 25100 464 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia arboricola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;