RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA624323", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA624323 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10800640 10800640 PRJNA624323_P_NODE_9169_length_243_cov_0.905882_g9007_i0 PRJNA624323 9169 243 0.905882 2.20129326 Pedosphaera parvula 1032527 Bacteria Bacteria 291 4.26e-74   NTclustered gi|183579829|emb|AM905426.1| 320771 g9007 i0 88.71 123.358024691358 248 15 100 9 1 243 293 54 Bacterium Ellin514 23S rRNA gene, isolate Ellin514 blastn 29976 291 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera parvula
19722979 19722979 PRJNA624323_P_NODE_7716_length_255_cov_2.000000_g7554_i0 PRJNA624323 7716 255 2 5.1 Sulfuriroseicoccus oceanibius 2707525 Bacteria Bacteria 110 1.36e-19   NTclustered gi|1953472588|gb|CP066776.1| 2707525 g7554 i0 75.61 62.4666666666667 246 46 94 13 8 247 631605 631368 Sulfuriroseicoccus oceanibius strain T37 chromosome, complete genome blastn 15929 110 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Sulfuriroseicoccus Sulfuriroseicoccus oceanibius
22273495 22273495 PRJNA624323_P_NODE_6838_length_273_cov_1.155000_g6676_i0 PRJNA624323 6838 273 1.155 3.15315 Opitutus sp. GAS368 1882749 Bacteria Bacteria 414 2.77e-111   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g6676 i0 94.139 87.5384615384615 273 15 100 1 1 273 2834429 2834158 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 23898 414 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
29606411 29606411 PRJNA624323_P_NODE_9470_length_241_cov_0.916667_g9308_i0 PRJNA624323 9470 241 0.916667 2.20916747 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 42.4 0.0472   NR MFL6529243.1 2201154 g9308 i0 37.5 0.49792531120332 40 25 49.8 0 30 149 196 235 MFL6529243.1 chromate efflux transporter [Chthoniobacterales bacterium] diamond 120 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;