RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA615351" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA615351 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13350148 13350148 PRJNA615351_P_NODE_8971_length_2134_cov_15.494998_g6409_i0 PRJNA615351 8971 2134 15.494998 330.66325732 Nitrospinota bacterium 2026769 Bacteria Bacteria 508 4.529999999999998e-169   NR MBI5183775.1 2026769 g6409 i0 44.2 3.66776007497657 654 300 91 11 171 2111 1 596 MBI5183775.1 elongation factor 4 [Nitrospinota bacterium] diamond 7827 508 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
26777054 26777054 PRJNA615351_P_NODE_85241_length_392_cov_2.731092_g71180_i0 PRJNA615351 85241 392 2.731092 10.70588064 Nitrospina 35800 Bacteria Bacteria 55.8 3.36e-7   NR TDJ61022.1 2024844 g71180 i0 37.7 3.11479591836735 69 40 50.5 1 213 16 17 85 TDJ61022.1 MAG: tetratricopeptide repeat protein, partial [Nitrospina sp.] diamond 1221 55.8 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp.
28501676 28501676 PRJNA615351_P_NODE_29927_length_1135_cov_5.253636_g15533_i1 PRJNA615351 29927 1135 5.253636 59.6287686 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 68.9 5.48e-9   NR GJL79073.1 2358456 g15533 i1 26.2 0.787665198237885 298 187 76.4 10 266 1132 18 291 GJL79073.1 MAG: arginase [Nitrospinaceae bacterium] diamond 894 68.9 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium
28785482 28785482 PRJNA615351_P_NODE_115187_length_264_cov_1.393013_g101088_i0 PRJNA615351 115187 264 1.393013 3.67755432 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 43.5 0.0256   NR GJL77954.1 2358456 g101088 i0 37.5 0.636363636363636 56 35 63.6 0 66 233 676 731 GJL77954.1 MAG: adenylate/guanylate cyclase domain-containing protein [Nitrospinaceae bacterium] diamond 168 43.5 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium
29290915 29290915 PRJNA615351_P_NODE_36649_length_969_cov_3.533191_g27094_i0 PRJNA615351 36649 969 3.533191 34.23662079 Nitrospinota bacterium 2026769 Bacteria Bacteria 60.8 1.44e-6   NR MCH8313934.1 2026769 g27094 i0 34.1 0.51702786377709 167 98 51.4 5 961 464 45 200 MCH8313934.1 isoaspartyl peptidase/L-asparaginase [Nitrospinota bacterium] diamond 501 60.8 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
31344455 31344455 PRJNA615351_P_NODE_21376_length_1410_cov_5.493818_g15533_i0 PRJNA615351 21376 1410 5.493818 77.4628338 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 69.7 4.75e-9   NR GJL79073.1 2358456 g15533 i0 25.9 0.657446808510638 309 196 63.8 10 266 1165 18 302 GJL79073.1 MAG: arginase [Nitrospinaceae bacterium] diamond 927 69.7 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium
32293915 32293915 PRJNA615351_P_NODE_93519_length_347_cov_5.394231_g79433_i0 PRJNA615351 93519 347 5.3942310000000004 18.71798157 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 43.9 0.0157   NR HJO57676.1 2358456 g79433 i0 42.1 0.985590778097983 57 30 48.4 2 10 177 67 121 HJO57676.1 arginase family protein [Nitrospinaceae bacterium] diamond 342 43.9 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium
32640854 32640854 PRJNA615351_P_NODE_173300_length_162_cov_1.566929_g159200_i0 PRJNA615351 173300 162 1.566929 2.53842498 Nitrospina sp. 2024844 Bacteria Bacteria 52.8 1.87e-6   NR TDJ50391.1 2024844 g159200 i0 75 0.592592592592593 32 8 59.3 0 65 160 1 32 TDJ50391.1 MAG: peroxiredoxin [Nitrospina sp.] diamond 96 52.8 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;