RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA615351", tax_clade = "Luna-1 subcluster" and tax_kingdom = "Bacillati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 2 ✖

tax_clade 1

  • Luna-1 subcluster · 2 ✖

bioproject 1

  • PRJNA615351 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24821676 24821676 PRJNA615351_P_NODE_115580_length_262_cov_115.348018_g101481_i0 PRJNA615351 115580 262 115.348018 302.21180716 Rhodoluna lacicola 529884 Bacteria Bacteria 407 4.43e-109   NTclustered gi|649018083|gb|CP007490.1| 529884 g101481 i0 94.656 164.687022900763 262 14 100 0 1 262 517400 517139 Rhodoluna lacicola strain MWH-Ta8 chromosome, complete genome blastn 43148 407 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Rhodoluna Rhodoluna lacicola
31895003 31895003 PRJNA615351_P_NODE_39397_length_912_cov_2.416192_g29218_i0 PRJNA615351 39397 912 2.416192 22.03567104 root 1 Root_unresolved Root_unresolved 192 4.14e-51   NR WP_007540007.1 1081644 g29218 i0 41.7 15.7302631578947 276 153 89.8 5 901 83 97 367 WP_007540007.1 ATP-dependent RNA helicase HrpA [Candidatus Aquiluna sp. IMCC13023] diamond 14346 192 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aquiluna Candidatus Aquiluna sp. IMCC13023

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;