RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA615351", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA615351 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27838350 27838350 PRJNA615351_P_NODE_176684_length_159_cov_1.282258_g162584_i0 PRJNA615351 176684 159 1.282258 2.03879022 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 41.6 0.0308   NR MDD4351567.1 2044595 g162584 i0 47.4 0.716981132075472 38 20 71.7 0 5 118 910 947 MDD4351567.1 right-handed parallel beta-helix repeat-containing protein [Candidatus Altimarinota bacterium] diamond 114 41.6 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31534286 31534286 PRJNA615351_P_NODE_129176_length_228_cov_1.186528_g115076_i0 PRJNA615351 129176 228 1.186528 2.70528384 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 43.9 0.0125   NR MBS9775367.1 2044595 g115076 i0 33.9 0.776315789473684 59 35 77.6 1 31 207 561 615 MBS9775367.1 PH domain-containing protein [Candidatus Altimarinota bacterium] diamond 177 43.9 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32306691 32306691 PRJNA615351_P_NODE_84899_length_394_cov_2.735376_g70838_i0 PRJNA615351 84899 394 2.735376 10.77738144 Bacillati 1783272 Bacteria Bacteria 50.1 1.77e-4   NR NDK09325.1 2044595 g70838 i0 39.6 2.33756345177665 53 32 40.4 0 265 107 106 158 NDK09325.1 DNA starvation/stationary phase protection protein [Candidatus Altimarinota bacterium] diamond 921 50.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32861609 32861609 PRJNA615351_P_NODE_73440_length_473_cov_2.856164_g59473_i0 PRJNA615351 73440 473 2.856164 13.50965572 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 45.8 0.0248   NR MBP7898556.1 2044595 g59473 i0 28.1 0.723044397463002 114 71 67.2 4 155 472 73 183 MBP7898556.1 class I tRNA ligase family protein [Candidatus Altimarinota bacterium] diamond 342 45.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;