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contig_metadata

19 rows where bioproject = "PRJNA615175" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 19 ✖

tax_clade 1

bioproject 1

  • PRJNA615175 · 19 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1149875 1149875 PRJNA615175_P_NODE_6581_length_593_cov_4.526923_g6416_i0 PRJNA615175 6581 593 4.526923 26.84465339 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 1046 0   NTclustered gi|33520229|gb|AY273974.1| 162125 g6416 i0 98.482 97.7537942664418 593 9 100 0 1 593 657 65 Hyaloperonospora brassicae large subunit ribosomal RNA gene, partial sequence blastn 57968 1051 0.995242626070409 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
4422788 4422788 PRJNA615175_P_NODE_9304_length_485_cov_3.589806_g9136_i0 PRJNA615175 9304 485 3.589806 17.4105591 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 135 8.18e-38   NR KAG9416599.1 112091 g9136 i0 61.7 7.83711340206186 107 41 66.2 0 9 329 18 124 KAG9416599.1 60S ribosomal protein L22 [Aphanomyces cochlioides] diamond 3801 136 0.992647058823529 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
12628798 12628798 PRJNA615175_P_NODE_15510_length_358_cov_1.410526_g15342_i0 PRJNA615175 15510 358 1.410526 5.04968308 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 127 2.86e-35   NR CCI49799.1 65357 g15342 i0 61.3 8.93296089385475 106 38 88.8 1 352 35 2 104 CCI49799.1 unnamed protein product [Albugo candida] diamond 3198 128 0.9921875 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
15178151 15178151 PRJNA615175_P_NODE_11792_length_420_cov_3.556196_g11624_i0 PRJNA615175 11792 420 3.556196 14.9360232 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 237 1.49e-76   NR GLE07478.1 114742 g11624 i0 80.7 55.1428571428571 140 27 100 0 1 420 99 238 GLE07478.1 hypothetical protein PINS_up017838 [Pythium insidiosum] diamond 23160 239 0.99163179916318 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
19001292 19001292 PRJNA615175_P_NODE_7995_length_530_cov_5.520788_g7829_i0 PRJNA615175 7995 530 5.520788 29.2601764 Hyaloperonospora 184462 SAR_Eukaryotes SAR_Eukaryotes 881 0   NTclustered gi|33520229|gb|AY273974.1| 162125 g7829 i0 96.958 97.9584905660377 526 15 99 1 1 526 657 133 Hyaloperonospora brassicae large subunit ribosomal RNA gene, partial sequence blastn 51918 881 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
20997429 20997429 PRJNA615175_P_NODE_35897_length_235_cov_2.302469_g35729_i0 PRJNA615175 35897 235 2.302469 5.41080215 Saprolegnia ferax 4770 SAR_Eukaryotes SAR_Eukaryotes 150 7.26e-32   NTclustered gi|50261276|ref|NC_005984.1| 4770 g35729 i0 89.744 48.8297872340426 117 12 50 0 99 215 31484 31368 Saprolegnia ferax mitochondrion, complete genome blastn 11475 150 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
24821451 24821451 PRJNA615175_P_NODE_9080_length_492_cov_3.169451_g8912_i0 PRJNA615175 9080 492 3.169451 15.59369892 Phytophthora quercina 78236 SAR_Eukaryotes SAR_Eukaryotes 250 1.59e-61   NTclustered gi|2248513480|ref|NC_063806.1| 78236 g8912 i0 80.059 68.5670731707317 341 64 69 4 29 367 21884 22222 Phytophthora quercina isolate ST_201908082014 mitochondrion, complete genome blastn 33735 250 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora quercina
27269899 27269899 PRJNA615175_P_NODE_2963_length_904_cov_4.596871_g2828_i0 PRJNA615175 2963 904 4.596871 41.55571384 Peronospora destructor 86335 SAR_Eukaryotes SAR_Eukaryotes 83.2 3.39e-14   NR CAI5738485.1 86335 g2828 i0 26.5 2.03097345132743 204 143 67.4 3 40 648 3 200 CAI5738485.1 unnamed protein product [Peronospora destructor] diamond 1836 83.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
28217051 28217051 PRJNA615175_P_NODE_5866_length_631_cov_5.231183_g5701_i0 PRJNA615175 5866 631 5.231183 33.00876473 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 85.5 3.11e-15   NR XP_067814559.1 4779 g5701 i0 44.5 1.13153724247227 119 62 55.2 3 284 631 489 606 XP_067814559.1 uncharacterized protein CCR75_002142 [Bremia lactucae] diamond 714 85.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
28280254 28280254 PRJNA615175_P_NODE_9526_length_477_cov_5.358911_g9358_i0 PRJNA615175 9526 477 5.358911 25.56200547 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.0114   NR KAJ8552260.1 4785 g9358 i0 32.2 0.742138364779874 59 40 37.1 0 51 227 44 102 KAJ8552260.1 hypothetical protein ON010_g10286 [Phytophthora cinnamomi] diamond 354 45.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
28577634 28577634 PRJNA615175_P_NODE_6867_length_578_cov_7.376238_g6702_i0 PRJNA615175 6867 578 7.376238 42.63465564 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 121 5.5899999999999995e-30   NR OQS06784.1 74557 g6702 i0 49.6 3.89792387543253 127 62 65.4 2 1 378 66 191 OQS06784.1 hypothetical protein THRCLA_01211 [Thraustotheca clavata] diamond 2253 122 0.991803278688525 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
28911651 28911651 PRJNA615175_P_NODE_448_length_1807_cov_4.688581_g409_i0 PRJNA615175 448 1807 4.688581 84.72265867 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 165 3.74e-40   NR TMW57421.1 41045 g409 i0 51.7 0.522966242390703 315 148 51.6 2 1 933 182 496 TMW57421.1 hypothetical protein Poli38472_003346 [Pythium oligandrum] diamond 945 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29082905 29082905 PRJNA615175_P_NODE_6768_length_583_cov_4.454902_g6603_i0 PRJNA615175 6768 583 4.454902 25.97207866 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89.4 2.72e-19   NR KAF0712969.1 120398 g6603 i0 50 2.41852487135506 94 46 48.4 1 578 297 19 111 KAF0712969.1 hypothetical protein As57867_004565, partial [Aphanomyces stellatus] diamond 1410 90.1 0.992230854605993 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
30712153 30712153 PRJNA615175_P_NODE_15954_length_352_cov_4.154122_g15786_i0 PRJNA615175 15954 352 4.154122 14.62250944 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 64.3 3.78e-9   NR KAG9402873.1 112091 g15786 i0 46.3 0.681818181818182 80 38 63.9 3 309 85 931 1010 KAG9402873.1 von Willebrand factor A domain-containing protein 8 [Aphanomyces cochlioides] diamond 240 64.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
30820052 30820052 PRJNA615175_P_NODE_15554_length_357_cov_2.693662_g15386_i0 PRJNA615175 15554 357 2.693662 9.61637334 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 120 3.12e-29   NR KAJ8519167.1 4785 g15386 i0 58.9 21.453781512605 95 39 79.8 0 70 354 130 224 KAJ8519167.1 hypothetical protein ON010_g18107 [Phytophthora cinnamomi] diamond 7659 121 0.991735537190083 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
31958209 31958209 PRJNA615175_P_NODE_7417_length_554_cov_2.804574_g7252_i0 PRJNA615175 7417 554 2.804574 15.53733996 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 48.9 6.3e-4   NR KAI9987183.1 4787 g7252 i0 45.9 4.79783393501805 61 31 31.9 1 301 125 24 84 KAI9987183.1 hypothetical protein PInf_023151 [Phytophthora infestans] diamond 2658 49.3 0.991886409736308 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
32230237 32230237 PRJNA615175_P_NODE_3898_length_788_cov_5.717483_g3747_i0 PRJNA615175 3898 788 5.717483 45.05376604 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 128 2.2799999999999997e-31   NR TYZ62746.1 1485010 g3747 i0 41.1 0.704314720812183 185 101 70.1 3 219 770 136 313 TYZ62746.1 hypothetical protein PybrP1_000187 [[Pythium] brassicae (nom. inval.)] diamond 555 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
32842765 32842765 PRJNA615175_P_NODE_11620_length_424_cov_2.330484_g11452_i0 PRJNA615175 11620 424 2.3304840000000002 9.88125216 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 63.5 1.54e-8   NR KAG6972716.1 29920 g11452 i0 37.7 5.85849056603774 69 43 48.8 0 63 269 46 114 KAG6972716.1 hypothetical protein JG687_00001280 [Phytophthora cactorum] diamond 2484 63.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
32874335 32874335 PRJNA615175_P_NODE_7200_length_563_cov_3.655102_g7035_i0 PRJNA615175 7200 563 3.655102 20.57822426 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 47.8 0.0112   NR KAG1713072.1 4784 g7035 i0 31.3 2.73889875666075 83 56 44.2 1 520 272 106 187 KAG1713072.1 hypothetical protein DVH05_000799 [Phytophthora capsici] diamond 1542 48.1 0.993762993762994 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;