RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA615175" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA615175 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
595122 595122 PRJNA615175_P_NODE_32281_length_245_cov_0.895349_g32113_i0 PRJNA615175 32281 245 0.895349 2.19360505 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 303 5.53e-78   NTclustered gi|820695469|tpe|LN714488.1| 572307 g32113 i0 89.024 2.01224489795918 246 25 100 2 1 245 157219 157463 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 493 303 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
6973215 6973215 PRJNA615175_P_NODE_15026_length_365_cov_0.750000_g14858_i0 PRJNA615175 15026 365 0.75 2.7375 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 518 2.8399999999999998e-142   NTclustered gi|820695469|tpe|LN714488.1| 572307 g14858 i0 92.329 4.72876712328767 365 27 99 1 1 364 157365 157729 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 1726 518 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
17172780 17172780 PRJNA615175_P_NODE_23194_length_285_cov_0.924528_g23026_i0 PRJNA615175 23194 285 0.924528 2.6349048 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 444 3.72e-120   NTclustered gi|820695469|tpe|LN714488.1| 572307 g23026 i0 94.755 44.9824561403509 286 14 100 1 1 285 116206 116491 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 12820 444 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
18447066 18447066 PRJNA615175_P_NODE_31395_length_246_cov_0.890173_g31227_i0 PRJNA615175 31395 246 0.890173 2.18982558 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 353 5.44e-93   NTclustered gi|820695469|tpe|LN714488.1| 572307 g31227 i0 92.683 22.869918699187 246 17 100 1 1 246 300272 300516 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 5626 353 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
22271889 22271889 PRJNA615175_P_NODE_11018_length_438_cov_1.657534_g10850_i0 PRJNA615175 11018 438 1.657534 7.25999892 Hepatozoon canis 110120 SAR_Eukaryotes SAR_Eukaryotes 185 3.999999999999999e-42   NTclustered gi|1584069862|gb|MH615006.1| 110120 g10850 i0 87.578 50.2009132420091 161 18 37 1 24 184 4329 4487 Hepatozoon canis isolate 9992 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 21988 185 1 Eukaryota Sar   Apicomplexa     Hepatozoidae Hepatozoon Hepatozoon canis
24821269 24821269 PRJNA615175_P_NODE_30060_length_248_cov_0.880000_g29892_i0 PRJNA615175 30060 248 0.88 2.1824 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 331 2.57e-86   NTclustered gi|820695469|tpe|LN714488.1| 572307 g29892 i0 90.763 5.02016129032258 249 21 100 2 1 248 157673 157426 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 1245 331 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
26827280 26827280 PRJNA615175_P_NODE_2601_length_956_cov_4.526614_g2474_i0 PRJNA615175 2601 956 4.526614 43.27442984 Plasmodium gonderi 77519 SAR_Eukaryotes SAR_Eukaryotes 58.2 2.4e-5   NR XP_028545909.1 77519 g2474 i0 36.7 2.18410041841004 79 42 22.9 2 916 698 233 309 XP_028545909.1 alternative splicing regulator [Plasmodium gonderi] diamond 2088 58.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gonderi
29890938 29890938 PRJNA615175_P_NODE_36211_length_213_cov_7.307143_g36043_i0 PRJNA615175 36211 213 7.307143 15.56421459 Cardiosporidium cionae 476202 SAR_Eukaryotes SAR_Eukaryotes 97.4 1.43e-24   NR KAF8821692.1 476202 g36043 i0 60 1.80281690140845 65 26 91.5 0 1 195 23 87 KAF8821692.1 ribosomal protein RPL37A, partial [Cardiosporidium cionae] diamond 384 97.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Cardiosporidium Cardiosporidium cionae
30080141 30080141 PRJNA615175_P_NODE_32752_length_244_cov_1.684211_g32584_i0 PRJNA615175 32752 244 1.684211 4.10947484 Sarcocystis calchasi 1344799 SAR_Eukaryotes SAR_Eukaryotes 48.5 2.77e-4   NR CAL7857720.1 1344799 g32584 i0 61.1 0.442622950819672 36 14 44.3 0 242 135 211 246 CAL7857720.1 unnamed protein product [Sarcocystis calchasi] diamond 108 48.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis calchasi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;