RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA615175", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA615175 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28470045 28470045 PRJNA615175_P_NODE_22026_length_293_cov_4.286364_g21858_i0 PRJNA615175 22026 293 4.286364 12.55904652 Allomyces macrogynus ATCC 38327 578462 Fungi Fungi 49.3 1.45e-4   NR KNE59861.1 578462 g21858 i0 37.9 1.32081911262799 66 36 67.6 3 33 230 69 129 KNE59861.1 hypothetical protein AMAG_05314 [Allomyces macrogynus ATCC 38327] diamond 387 49.3 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces macrogynus
28975180 28975180 PRJNA615175_P_NODE_3568_length_822_cov_3.594126_g3420_i0 PRJNA615175 3568 822 3.594126 29.54371572 Paraphysoderma sedebokerense 1500003 Fungi Fungi 236 9.18e-72   NR KAI9144016.1 1500003 g3420 i0 53.5 3.50729927007299 228 102 82.1 2 127 801 179 405 KAI9144016.1 DNA glycosylase [Paraphysoderma sedebokerense] diamond 2883 236 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
29227920 29227920 PRJNA615175_P_NODE_27349_length_253_cov_3.311111_g27181_i0 PRJNA615175 27349 253 3.311111 8.37711083 Paraphysoderma sedebokerense 1500003 Fungi Fungi 50.8 5.87e-5   NR KAI9140468.1 1500003 g27181 i0 33.3 0.99604743083004 84 54 97.2 1 3 248 773 856 KAI9140468.1 FtsX-like permease family-domain-containing protein [Paraphysoderma sedebokerense] diamond 252 50.8 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;