RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA615175", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA615175 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27964636 27964636 PRJNA615175_P_NODE_21125_length_301_cov_1.214912_g20957_i0 PRJNA615175 21125 301 1.214912 3.65688512 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 63.2 4.4e-9   NR KOO42296.1 1460289 g20957 i0 57.7 1.03654485049834 52 20 51.8 1 144 299 99 148 KOO42296.1 ATP-dependent DNA helicase pif1, partial [Chrysochromulina tobinii] diamond 312 63.2 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
28880256 28880256 PRJNA615175_P_NODE_1928_length_1097_cov_3.853516_g1816_i0 PRJNA615175 1928 1097 3.853516 42.27307052 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 87.8 2.43e-17   NR KOO21464.1 1460289 g1816 i0 41.1 1.17593436645397 90 48 23.2 1 473 219 13 102 KOO21464.1 zinc c3hc4 type (ring finger) domain containing protein [Chrysochromulina tobinii] diamond 1290 87.8 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
30251506 30251506 PRJNA615175_P_NODE_1832_length_1124_cov_3.036156_g1723_i0 PRJNA615175 1832 1124 3.036156 34.12639344 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 181 9.98e-49   NR KOO35052.1 1460289 g1723 i0 38.4 1.47864768683274 279 157 72.6 7 991 176 139 409 KOO35052.1 putative serine threonine-protein kinase gcn2-like protein [Chrysochromulina tobinii] diamond 1662 182 0.994505494505495 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;