RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA615175", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA615175 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12074070 12074070 PRJNA615175_P_NODE_12430_length_406_cov_2.672673_g12262_i0 PRJNA615175 12430 406 2.672673 10.85105238 Parabodo caudatus 351713 Euglenozoa other_Eukaryota 713 0   NTclustered gi|20331092|gb|AY028450.1| 351713 g12262 i0 100 92.4926108374384 386 0 95 0 1 386 386 1 Bodo caudatus 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 37552 713 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Parabodo Parabodo caudatus
26985317 26985317 PRJNA615175_P_NODE_3822_length_795_cov_3.274238_g3671_i0 PRJNA615175 3822 795 3.274238 26.0301921 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 201 2.2999999999999998e-55   NR KAJ9469344.1 91374 g3671 i0 46.8 0.871698113207547 231 120 86 3 686 3 579 809 KAJ9469344.1 hypothetical protein DIPPA_01757 [Diplonema papillatum] diamond 693 201 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
29196250 29196250 PRJNA615175_P_NODE_2689_length_943_cov_4.370115_g2558_i0 PRJNA615175 2689 943 4.370115 41.21018445 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 80.5 6.44e-13   NR KAJ9441701.1 91374 g2558 i0 25.2 0.871686108165429 274 188 85.3 4 77 880 88 350 KAJ9441701.1 Protein spartin [Diplonema papillatum] diamond 822 80.5 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
30725156 30725156 PRJNA615175_P_NODE_16794_length_343_cov_1.025926_g16626_i0 PRJNA615175 16794 343 1.025926 3.51892618 Kinetoplastea 5653 Euglenozoa other_Eukaryota 133 3.85e-35   NR XP_009308608.1 71804 g16626 i0 58.8 2.00291545189504 114 46 98.8 1 342 4 197 310 XP_009308608.1 delta-6 fatty acid desaturase [Trypanosoma grayi] diamond 687 134 0.992537313432836 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;