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contig_metadata

15 rows where bioproject = "PRJNA613025" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 15 ✖

tax_clade 1

bioproject 1

  • PRJNA613025 · 15 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1867771 1867771 PRJNA613025_S_NODE_23882_length_194_cov_2.110345_g23728_i0 PRJNA613025 23882 194 2.110345 4.0940693 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 348 1.91e-91   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g23728 i0 98.969 82.9690721649485 194 2 100 0 1 194 1757 1564 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 16096 348 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
4976843 4976843 PRJNA613025_S_NODE_11504_length_351_cov_1.821192_g11350_i0 PRJNA613025 11504 351 1.821192 6.39238392 Vermamoeba 1260114 Tubulinea other_Eukaryota 632 9.309999999999999e-177   NTclustered gi|909719645|gb|KT185625.1| 5778 g11350 i0 99.145 40.022792022792 351 3 100 0 1 351 5472 5122 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 14048 632 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5695449 5695449 PRJNA613025_S_NODE_27645_length_176_cov_1.606299_g27491_i0 PRJNA613025 27645 176 1.606299 2.82708624 Cryptodifflugia oviformis 1165352 Tubulinea other_Eukaryota 303 3.71e-78   NTclustered gi|2517949732|gb|OR125031.1| 1165352 g27491 i0 97.74 54.0056818181818 177 2 100 2 1 176 1467 1642 Cryptodifflugia oviformis isolate strain_6 small subunit ribosomal RNA gene, partial sequence blastn 9505 303 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia oviformis
8244944 8244944 PRJNA613025_S_NODE_26747_length_180_cov_1.526718_g26593_i0 PRJNA613025 26747 180 1.526718 2.7480924 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 326 8.15e-85   NTclustered gi|909719647|gb|KT185627.1| 5778 g26593 i0 99.441 85.7277777777778 179 1 99 0 1 179 19995 20173 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 15431 326 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10795982 10795982 PRJNA613025_S_NODE_21269_length_210_cov_2.217391_g21115_i0 PRJNA613025 21269 210 2.217391 4.6565211 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 239 1.32e-58   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g21115 i0 87.619 1 210 21 100 5 1 210 3995 4199 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 210 239 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
12627751 12627751 PRJNA613025_S_NODE_15570_length_270_cov_2.235294_g15416_i0 PRJNA613025 15570 270 2.235294 6.0352938 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 488 1.5899999999999995e-133   NTclustered gi|909719645|gb|KT185625.1| 5778 g15416 i0 99.259 37.5555555555556 270 2 100 0 1 270 3598 3867 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 10140 488 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14620774 14620774 PRJNA613025_S_NODE_24512_length_191_cov_1.394366_g24358_i0 PRJNA613025 24512 191 1.394366 2.66323906 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 134 5.7e-27   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g24358 i0 80 1.1151832460733 185 34 95 1 3 184 2920 2736 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 213 134 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
15894515 15894515 PRJNA613025_S_NODE_14393_length_289_cov_2.283333_g14239_i0 PRJNA613025 14393 289 2.283333 6.59883237 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 534 2.18e-147   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g14239 i0 100 98.2975778546713 289 0 100 0 1 289 1259 971 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 28408 534 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
17169582 17169582 PRJNA613025_S_NODE_19854_length_221_cov_1.633721_g19700_i0 PRJNA613025 19854 221 1.633721 3.61052341 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 265 2.3099999999999997e-66   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g19700 i0 90.196 57.2171945701357 204 19 92 1 19 221 3642 3845 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12645 265 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
17169705 17169705 PRJNA613025_S_NODE_25214_length_187_cov_1.797101_g25060_i0 PRJNA613025 25214 187 1.797101 3.36057887 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 265 1.89e-66   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g25060 i0 94.706 57.8663101604278 170 9 91 0 2 171 4428 4259 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10821 265 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
19718042 19718042 PRJNA613025_S_NODE_11836_length_343_cov_1.986395_g11682_i0 PRJNA613025 11836 343 1.986395 6.81333485 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 628 1.1799999999999997e-175   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g11682 i0 99.708 4.99125364431487 343 1 100 0 1 343 967 625 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 1712 628 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
20993772 20993772 PRJNA613025_S_NODE_11257_length_357_cov_2.201299_g11103_i0 PRJNA613025 11257 357 2.201299 7.85863743 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 632 9.489999999999998e-177   NTclustered gi|909719645|gb|KT185625.1| 5778 g11103 i0 98.599 42.6750700280112 357 5 100 0 1 357 6699 7055 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15235 632 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22269044 22269044 PRJNA613025_S_NODE_27678_length_176_cov_1.409449_g27524_i0 PRJNA613025 27678 176 1.409449 2.48063024 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 291 2.89e-74   NTclustered gi|89243421|gb|DQ407552.1| 5778 g27524 i0 96.571 99.4318181818182 175 6 99 0 2 176 432 258 Hartmannella vermiformis isolate WWS5.5 18S ribosomal RNA gene gene, partial sequence blastn 17500 291 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24817731 24817731 PRJNA613025_S_NODE_10400_length_382_cov_1.837838_g10247_i0 PRJNA613025 10400 382 1.837838 7.02054116 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 634 2.8399999999999995e-177   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g10247 i0 97.074 58.2225130890052 376 11 98 0 1 376 2314 2689 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22241 634 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
25375098 25375098 PRJNA613025_S_NODE_21140_length_211_cov_1.641975_g20986_i0 PRJNA613025 21140 211 1.641975 3.46456725 Vermamoeba 1260114 Tubulinea other_Eukaryota 368 1.6200000000000002e-97   NTclustered gi|909719645|gb|KT185625.1| 5778 g20986 i0 98.104 96.8957345971564 211 4 100 0 1 211 5111 4901 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 20445 368 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;