RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA613025" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA613025 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9520048 9520048 PRJNA613025_S_NODE_20088_length_219_cov_1.500000_g19934_i0 PRJNA613025 20088 219 1.5 3.285 Heterorhabditis bacteriophora 37862 Nematoda Nematoda 311 2.9000000000000004e-80   NTclustered gi|1963716463|emb|LR890121.1| 37862 g19934 i0 94.949 40.1506849315069 198 10 90 0 22 219 1 198 Heterorhabditis bacteriophora partial mRNA for Hb-hsp90-5 isoform (Hb-hsp90-5 isoform gene), clone 22 blastn 8793 311 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heterorhabditidae Heterorhabditis Heterorhabditis bacteriophora
10795834 10795834 PRJNA613025_S_NODE_15589_length_270_cov_1.633484_g15435_i0 PRJNA613025 15589 270 1.633484 4.4104068 Ostertagia ostertagi 6317 Nematoda Nematoda 149 7.399999999999999e-43   NR KAK6031123.1 6317 g15435 i0 79.5 13.6222222222222 88 18 97.8 0 2 265 105 192 KAK6031123.1 ribosomal protein L5 [Ostertagia ostertagi] diamond 3678 149 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
15177148 15177148 PRJNA613025_S_NODE_25452_length_186_cov_1.481752_g25298_i0 PRJNA613025 25452 186 1.481752 2.75605872 Metazoa 33208 Nematoda Nematoda 337 3.9199999999999994e-88   NTclustered gi|158821895|gb|EU195959.1| 479134 g25298 i0 99.459 100.069892473118 185 1 99 0 2 186 1971 1787 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 18613 337 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
30143096 30143096 PRJNA613025_S_NODE_23652_length_196_cov_0.768707_g23498_i0 PRJNA613025 23652 196 0.768707 1.50666572 Pristionchus fissidentatus 1538716 Nematoda Nematoda 42 0.0359   NR GMT13475.1 1538716 g23498 i0 32.7 0.75 49 33 75 0 170 24 202 250 GMT13475.1 hypothetical protein PFISCL1PPCAC_4772, partial [Pristionchus fissidentatus] diamond 147 42 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
32528049 32528049 PRJNA613025_S_NODE_30779_length_166_cov_0.871795_g30625_i0 PRJNA613025 30779 166 0.871795 1.4471797 Metazoa 33208 Nematoda Nematoda 68.2 1.36e-11   NR KRZ43218.1 6337 g30625 i0 66.7 3.77710843373494 42 14 75.9 0 3 128 659 700 KRZ43218.1 V-type proton ATPase subunit B [Trichinella pseudospiralis] diamond 627 68.6 0.994169096209913 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;