RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA613025", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA613025 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12070896 12070896 PRJNA613025_S_NODE_12570_length_325_cov_3.971014_g12416_i0 PRJNA613025 12570 325 3.971014 12.9057955 uncultured Mycoplasma sp. 167967 Bacteria Bacteria 73.1 2.34e-8   NTclustered gi|2525974075|gb|OR193689.1| 167967 g12416 i0 81.053 0.584615384615385 95 15 29 3 147 240 254 346 Uncultured Mycoplasma sp. clone ID132 23S ribosomal RNA gene, partial sequence blastn 190 73.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma uncultured Mycoplasma sp.
19718295 19718295 PRJNA613025_S_NODE_22096_length_205_cov_1.294872_g21942_i0 PRJNA613025 22096 205 1.294872 2.6544876 Acholeplasma equifetale 264634 Bacteria Bacteria 167 6.129999999999999e-37   NTclustered gi|294768449|gb|GU905034.1| 264634 g21942 i0 83.243 23.9707317073171 185 27 90 4 10 193 566 747 Acholeplasma equifetale strain ATCC 29724 23S ribosomal RNA gene, partial sequence; 23S-5S ribosomal RNA intergenic spacer, complete sequence; and 5S ribosomal RNA gene, partial sequence blastn 4914 167 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma equifetale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;