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contig_metadata

25 rows where bioproject = "PRJNA613025" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 25 ✖

bioproject 1

  • PRJNA613025 · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2423940 2423940 PRJNA613025_S_NODE_11162_length_359_cov_6.464516_g11008_i0 PRJNA613025 11162 359 6.464516 23.20761244 Eukaryota 2759 Plants Plants 664 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g11008 i0 100 99.8774373259053 359 0 100 0 1 359 506 864 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 35856 664 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
2423986 2423986 PRJNA613025_S_NODE_18602_length_232_cov_7.551913_g18448_i0 PRJNA613025 18602 232 7.551913 17.52043816 Chlorophyta 3041 Plants Plants 115 2.61e-21   NTclustered gi|15281672|gb|AF395512.1| 51713 g18448 i0 97.059 36.2413793103448 68 2 29 0 165 232 1902 1835 Stephanosphaera sp. UTEX-LB 2409 strain UTEX LB 2409 26S ribosomal RNA gene, partial sequence blastn 8408 115 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Stephanosphaera Stephanosphaera sp. UTEX-LB 2409
2424081 2424081 PRJNA613025_S_NODE_27962_length_175_cov_1.214286_g27808_i0 PRJNA613025 27962 175 1.214286 2.1250005 Micractinium 126838 Plants Plants 252 1.3499999999999999e-62   NTclustered gi|1525820383|dbj|LC153789.1| 532145 g27808 i0 92.571 98.36 175 13 100 0 1 175 536 710 Micractinium reisseri gene for 28S ribosormal RNA, partial sequence, strain: SIT04 blastn 17213 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium reisseri
3142478 3142478 PRJNA613025_S_NODE_16163_length_261_cov_1.679245_g16009_i0 PRJNA613025 16163 261 1.679245 4.38282945 Eukaryota 2759 Plants Plants 100 7.85e-24   NR KAK2080821.1 3111 g16009 i0 66.7 5.83908045977012 84 28 96.6 0 8 259 36 119 KAK2080821.1 60S ribosomal protein L7B [Prototheca wickerhamii] diamond 1524 101 0.99009900990099 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
4419417 4419417 PRJNA613025_S_NODE_25644_length_185_cov_1.845588_g25490_i0 PRJNA613025 25644 185 1.845588 3.4143378 Aegagropila linnaei 162062 Plants Plants 124 3.3e-24   NTclustered gi|1169296929|gb|KY364699.1| 162062 g25490 i0 80 4.92972972972973 170 32 91 2 1 169 3970 3802 Aegagropila linnaei 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 912 124 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Pithophoraceae Aegagropila Aegagropila linnaei
4419480 4419480 PRJNA613025_S_NODE_28944_length_171_cov_1.245902_g28790_i0 PRJNA613025 28944 171 1.245902 2.13049242 [Myrmecia] bisecta 41462 Plants Plants 89.4 5.13e-19   NR KAK9814170.1 41462 g28790 i0 76.8 1.96491228070175 56 13 98.2 0 3 170 38 93 KAK9814170.1 hypothetical protein WJX72_001591 [[Myrmecia] bisecta] diamond 336 89.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
4976841 4976841 PRJNA613025_S_NODE_10944_length_366_cov_1.839117_g10790_i0 PRJNA613025 10944 366 1.839117 6.73116822 Trebouxiophyceae 75966 Plants Plants 540 6.08e-149   NTclustered gi|1169296931|gb|KY364701.1| 63676 g10790 i0 94.134 53.3551912568306 358 16 97 5 8 363 5785 5431 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 19528 545 0.990825688073395 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
5695535 5695535 PRJNA613025_S_NODE_32285_length_163_cov_1.973684_g32131_i0 PRJNA613025 32285 163 1.973684 3.21710492 Parachlorella kessleri 3074 Plants Plants 291 2.64e-74   NTclustered gi|254798615|ref|NC_012978.1| 3074 g32131 i0 98.773 144.907975460123 163 2 100 0 1 163 94068 93906 Parachlorella kessleri chloroplast, complete genome blastn 23620 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Parachlorella Parachlorella kessleri
6969968 6969968 PRJNA613025_S_NODE_15646_length_269_cov_2.086364_g15492_i0 PRJNA613025 15646 269 2.086364 5.61231916 Dicloster acuatus 91190 Plants Plants 453 5.78e-123   NTclustered gi|725651324|ref|NC_025546.1| 91190 g15492 i0 97.037 125.591078066914 270 7 100 1 1 269 98819 98550 Dicloster acuatus culture-collection SAG:41.98 chloroplast, complete genome blastn 33784 453 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
6970300 6970300 PRJNA613025_S_NODE_29426_length_169_cov_1.291667_g29272_i0 PRJNA613025 29426 169 1.291667 2.18291723 Botryococcus braunii 38881 Plants Plants 89 1.13e-21   NR BAM44860.1 38881 g29272 i0 69.1 0.976331360946746 55 17 97.6 0 167 3 19 73 BAM44860.1 ribulose bisphosphate carboxylase small subunit, partial [Botryococcus braunii] diamond 165 89 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Botryococcus Botryococcus braunii
6970369 6970369 PRJNA613025_S_NODE_32146_length_164_cov_0.886957_g31992_i0 PRJNA613025 32146 164 0.886957 1.45460948 Polytomella parva 51329 Plants Plants 94 1.14e-20   NR QKY14934.1 51329 g31992 i0 83.3 4.92073170731707 54 9 98.8 0 1 162 484 537 QKY14934.1 heat shock protein 70c (HS70), partial [Polytomella parva] diamond 807 94 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
9520123 9520123 PRJNA613025_S_NODE_23508_length_196_cov_2.455782_g23354_i0 PRJNA613025 23508 196 2.455782 4.81333272 Dicloster acuatus 91190 Plants Plants 276 9.24e-70   NTclustered gi|725651324|ref|NC_025546.1| 91190 g23354 i0 91.919 104.015306122449 198 14 100 1 1 196 104699 104896 Dicloster acuatus culture-collection SAG:41.98 chloroplast, complete genome blastn 20387 276 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
13345778 13345778 PRJNA613025_S_NODE_18771_length_231_cov_1.516484_g18617_i0 PRJNA613025 18771 231 1.516484 3.50307804 Chlamydomonas incerta 51695 Plants Plants 195 3.24e-45   NTclustered gi|74272614|gb|DQ122872.1| 51695 g18617 i0 81.974 14.9437229437229 233 38 100 4 1 231 576 346 Chlamydomonas incerta mitochondrial ADP/ATP translocator (ANT) mRNA, complete cds; nuclear gene for mitochondrial product blastn 3452 195 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
13345849 13345849 PRJNA613025_S_NODE_21591_length_208_cov_1.308176_g21437_i0 PRJNA613025 21591 208 1.308176 2.72100608 Coccomyxa subellipsoidea 248742 Plants Plants 132 2.27e-26   NTclustered gi|545373616|ref|XM_005651099.1| 574566 g21437 i0 80.588 78.8942307692308 170 33 82 0 23 192 192 361 Coccomyxa subellipsoidea C-169 ribosomal protein L14b/L23e mRNA blastn 16410 132 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
13345901 13345901 PRJNA613025_S_NODE_23571_length_196_cov_1.380952_g23417_i0 PRJNA613025 23571 196 1.380952 2.70666592 Stichococcus bacillaris 37433 Plants Plants 246 7.25e-61   NTclustered gi|371782093|emb|HE610125.1| 37433 g23417 i0 88.325 4.14285714285714 197 22 100 1 1 196 7137 7333 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 812 246 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
13345950 13345950 PRJNA613025_S_NODE_25631_length_185_cov_1.985294_g25477_i0 PRJNA613025 25631 185 1.985294 3.6727939 Chlorosarcinopsis eremi 332213 Plants Plants 87.9 4.33e-13   NTclustered gi|1642525901|ref|NC_042250.1| 332213 g25477 i0 84.444 2.01081081081081 90 12 52 2 53 142 131318 131405 Chlorosarcinopsis eremi culture UTEX:1186 chloroplast, complete genome blastn 372 87.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis eremi
15177210 15177210 PRJNA613025_S_NODE_32112_length_164_cov_0.886957_g31958_i0 PRJNA613025 32112 164 0.886957 1.45460948 Chlamydomonadales 3042 Plants Plants 86.1 1.35e-12   NTclustered gi|15281672|gb|AF395512.1| 51713 g31958 i0 94.545 35.7378048780488 55 3 34 0 110 164 1896 1842 Stephanosphaera sp. UTEX-LB 2409 strain UTEX LB 2409 26S ribosomal RNA gene, partial sequence blastn 5861 86.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Stephanosphaera Stephanosphaera sp. UTEX-LB 2409
15894721 15894721 PRJNA613025_S_NODE_22693_length_201_cov_1.690789_g22539_i0 PRJNA613025 22693 201 1.690789 3.39848589 Dicloster acuatus 91190 Plants Plants 357 3.31e-94   NTclustered gi|725651324|ref|NC_025546.1| 91190 g22539 i0 98.995 117.044776119403 199 2 99 0 1 199 98775 98973 Dicloster acuatus culture-collection SAG:41.98 chloroplast, complete genome blastn 23526 357 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
18443851 18443851 PRJNA613025_S_NODE_23955_length_194_cov_1.379310_g23801_i0 PRJNA613025 23955 194 1.37931 2.6758614 Monoraphidium neglectum 145388 Plants Plants 52.8 0.017   NTclustered gi|926767819|ref|XM_014037508.1| 145388 g23801 i0 91.892 0.190721649484536 37 3 19 0 158 194 88 124 Monoraphidium neglectum hypothetical protein mRNA blastn 37 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
18443939 18443939 PRJNA613025_S_NODE_27715_length_176_cov_1.204724_g27561_i0 PRJNA613025 27715 176 1.204724 2.12031424 Chlorella sorokiniana 3076 Plants Plants 75 3.17e-9   NTclustered gi|2323365057|gb|CP084621.1| 3076 g27561 i0 86.111 4.57386363636364 72 6 40 4 103 173 14678 14610 Chlorella sorokiniana strain SLA-04 mitochondrion, complete genome blastn 805 75 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
19000292 19000292 PRJNA613025_S_NODE_30595_length_166_cov_1.307692_g30441_i0 PRJNA613025 30595 166 1.307692 2.17076872 Chlorellaceae 35461 Plants Plants 279 5.86e-71   NTclustered gi|254798615|ref|NC_012978.1| 3074 g30441 i0 96.988 176.234939759036 166 5 100 0 1 166 92106 91941 Parachlorella kessleri chloroplast, complete genome blastn 29255 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Parachlorella Parachlorella kessleri
25375274 25375274 PRJNA613025_S_NODE_7440_length_503_cov_2.636564_g7288_i0 PRJNA613025 7440 503 2.636564 13.261916920000001 Chlorellaceae 35461 Plants Plants 78.7 8.11e-10   NTclustered gi|741870561|ref|NC_026009.1| 3075 g7288 i0 90 0.74155069582505 60 6 12 0 356 415 32324 32383 Auxenochlorella protothecoides mitochondrion, complete genome blastn 373 78.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
30124693 30124693 PRJNA613025_S_NODE_21172_length_211_cov_1.259259_g21018_i0 PRJNA613025 21172 211 1.259259 2.65703649 Eukaryota 2759 Plants Plants 114 5.41e-29   NR GIL46450.1 51714 g21018 i0 76.5 5.80094786729858 68 16 96.7 0 209 6 106 173 GIL46450.1 hypothetical protein Vafri_3453 [Volvox africanus] diamond 1224 115 0.991304347826087 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
31217311 31217311 PRJNA613025_S_NODE_33795_length_161_cov_0.910714_g33641_i0 PRJNA613025 33795 161 0.910714 1.46624954 Helicosporidium sp. ATCC 5 1907511 Plants Plants 79 9.32e-17   NR KDD75220.1 1291522 g33641 i0 73.6 1.95652173913043 53 14 98.8 0 160 2 97 149 KDD75220.1 ribosomal protein L32 [Helicosporidium sp. ATCC 50920] diamond 315 79 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ATCC 50920
31723727 31723727 PRJNA613025_S_NODE_23437_length_197_cov_1.033784_g23283_i0 PRJNA613025 23437 197 1.033784 2.03655448 Trebouxia sp. C 2796353 Plants Plants 56.2 3.64e-8   NR KAL0042167.1 2905653 g23283 i0 54.2 0.730964467005076 48 21 71.6 1 195 55 18 65 KAL0042167.1 hypothetical protein WJX77_005300 [Trebouxia sp. C0004] diamond 144 56.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;