RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA613025", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA613025 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3700465 3700465 PRJNA613025_S_NODE_29623_length_168_cov_2.378151_g29469_i0 PRJNA613025 29623 168 2.378151 3.99529368 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 76.8 8.37e-10   NTclustered gi|2202538979|gb|OM891885.1| 216927 g29469 i0 75.287 72.2678571428571 174 35 100 8 1 168 3935 3764 Paralia sulcata small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12141 76.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Paraliales Paraliaceae Paralia Paralia sulcata
19718704 19718704 PRJNA613025_S_NODE_6816_length_540_cov_3.238289_g6665_i0 PRJNA613025 6816 540 3.238289 17.4867606 Proschkinia sp. SZCZR1824 2588390 SAR_Eukaryotes SAR_Eukaryotes 80.5 2.43e-10   NTclustered gi|1681061561|gb|MH800316.1| 2588390 g6665 i0 76.433 1.28703703703704 157 31 29 6 80 234 4414 4566 Proschkinia sp. SZCZR1824 mitochondrion, complete genome blastn 695 80.5 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Proschkiniaceae Proschkinia Proschkinia sp. SZCZR1824
29335399 29335399 PRJNA613025_S_NODE_19309_length_226_cov_1.553672_g19155_i0 PRJNA613025 19309 226 1.553672 3.51129872 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.98e-17   NR KAG7373989.1 303405 g19155 i0 56 10.9513274336283 75 32 99.6 1 2 226 45 118 KAG7373989.1 50S ribosomal protein L14e [Nitzschia inconspicua] diamond 2475 81.6 0.991421568627451 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua
31894951 31894951 PRJNA613025_S_NODE_12677_length_323_cov_2.244526_g12523_i0 PRJNA613025 12677 323 2.244526 7.24981898 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 124 1.27e-34   NR AID23594.1 2850 g12523 i0 79.2 1.43962848297214 77 16 71.5 0 319 89 21 97 AID23594.1 ubiquitin-ribosomal protein fusion S27a, partial [Phaeodactylum tricornutum] diamond 465 124 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;